Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes. - Hongbo Shi; Juan Xu 001; Guangde Zhang; Liangde Xu; Chunquan Li 002; Li Wang 164; Zheng Zhao; Wei Jiang 023; Zheng Guo 002; Xia Li 004 (BMC Syst. Biol., 2013)

Co-LncRNA: investigating the lncRNA combinatorial effects in GO annotations and KEGG pathways based on human RNA-Seq data. - Zheng Zhao; Jing Bai 014; Aiwei Wu; Yuan Wang; Jinwen Zhang; Zishan Wang; Yongsheng Li 001; Juan Xu 001; Xia Li 004 (Database J. Biol. Databases Curation, 2015)

miRNA-miRNA crosstalk: from genomics to phenomics. - Juan Xu 001; Tingting Shao; Na Ding; Yongsheng Li 001; Xia Li 004 (Briefings Bioinform., 2017)

Combinatorial epigenetic regulation of non-coding RNAs has profound effects on oncogenic pathways in breast cancer subtypes. - Juan Xu 001; Zishan Wang; Shengli Li 005; Juan Chen; Jinwen Zhang; Chunjie Jiang; Zheng Zhao; Jing Li 115; Yongsheng Li 001; Xia Li 004 (Briefings Bioinform., 2018)

Landscape of the long non-coding RNA transcriptome in human heart. - Chunjie Jiang; Na Ding; Junyi Li; Xiyun Jin; Lili Li; Tao Pan; Caiqin Huo; Yongsheng Li 001; Juan Xu 001; Xia Li 004 (Briefings Bioinform., 2019)

Systematic review regulatory principles of non-coding RNAs in cardiovascular diseases. - Yongsheng Li 001; Caiqin Huo; Tao Pan; Lili Li; Xiyun Jin; Xiaoyu Lin; Juan Chen; Jinwen Zhang; Zheng Guo 002; Juan Xu 001; Xia Li 004 (Briefings Bioinform., 2019)

Systematic review of computational methods for identifying miRNA-mediated RNA-RNA crosstalk. - Yongsheng Li 001; Xiyun Jin; Zishan Wang; Lili Li; Hong Chen 022; Xiaoyu Lin; Song Yi; Yunpeng Zhang; Juan Xu 001 (Briefings Bioinform., 2019)

Survey of miRNA-miRNA cooperative regulation principles across cancer types. - Tingting Shao; Guangjuan Wang; Hong Chen 022; Yunjin Xie; Xiyun Jin; Jing Bai 014; Juan Xu 001; Xia Li 004; Jian Huang 004; Yan Jin 007; Yongsheng Li 001 (Briefings Bioinform., 2019)

CeRNASeek: an R package for identification and analysis of ceRNA regulation. - Mengying Zhang; Xiyun Jin; Junyi Li; Yi Tian; Qi Wang; Xinhui Li; Juan Xu 001; Yongsheng Li 001; Xia Li 004 (Briefings Bioinform., 2021)

SurvivalMeth: a web server to investigate the effect of DNA methylation-related functional elements on prognosis. - Chunlong Zhang; Ning Zhao; Xue Zhang; Jun Xiao; Junyi Li; Dezhong Lv; Weiwei Zhou; Yongsheng Li 001; Juan Xu 001; Xia Li 004 (Briefings Bioinform., 2021)

Shedding light on the hidden human proteome expands immunopeptidome in cancer. - Yongsheng Li 001; Yunpeng Zhang; Tao Pan; Ping Zhou; Weiwei Zhou; Yueying Gao; Shaojiang Zheng; Juan Xu 001 (Briefings Bioinform., 2022)

PRES: a webserver for decoding the functional perturbations of RNA editing sites. - Dezhong Lv; Kang Xu; Changbo Yang; Yujie Liu; Ya Luo; Weiwei Zhou; Haozhe Zou; Yangyang Cai; Na Ding; Xia Li 004; Tingting Shao; Yongsheng Li 001; et al. (Briefings Bioinform., 2022)

TransLnc: a comprehensive resource for translatable lncRNAs extends immunopeptidome. - Dezhong Lv; Zhenghong Chang; Yangyang Cai; Junyi Li; Liping Wang; Qiushuang Jiang; Kang Xu; Na Ding; Xia Li 004; Juan Xu 001; Yongsheng Li 001 (Nucleic Acids Res., 2022)

IEAtlas: an atlas of HLA-presented immune epitopes derived from non-coding regions. - Yangyang Cai; Dezhong Lv; Donghao Li; Jiaqi Yin; Yingying Ma; Ya Luo; Limei Fu; Na Ding; Yongsheng Li 001; Zhenwei Pan; Xia Li 004; Juan Xu 001 (Nucleic Acids Res., 2023)

ImmCluster: an ensemble resource for immunology cell type clustering and annotations in normal and cancerous tissues. - Tiantongfei Jiang; Weiwei Zhou; Qi Sheng; Jiaxin Yu; Yunjin Xie; Na Ding; Yunpeng Zhang; Juan Xu 001; Yongsheng Li 001 (Nucleic Acids Res., 2023)

Multi-omics characterization of RNA binding proteins reveals disease comorbidities and potential drugs in COVID-19. - Jiwei Pan; Yueying Gao; Huirui Han 001; Tao Pan; Jing Guo; Si Li; Juan Xu 001; Yongsheng Li 001 (Comput. Biol. Medicine, 2023)

Open a new epoch of arsenic trioxide investigation: ATOdb. - Yanan Jiang; Jianing Li; Yujie Liu; Xiuyun Shen; Junyi Li; Fengnan Zhi; Juan Xu 001; Xia Li 004; Tingting Shao; Yingqi Xu (Comput. Biol. Medicine, 2023)

MicroProteinDB: A database to provide knowledge on sequences, structures and function of ncRNA-derived microproteins. - Yinan Liang; Dezhong Lv; Kefan Liu; Liting Yang; Huan Shu; Luan Wen; Chongwen Lv; Qisen Sun; Jiaqi Yin; Hui Liu; Juan Xu 001; Zhigang Liu; et al. (Comput. Biol. Medicine, 2024)

Cancer Stemness Online: A Resource for Investigating Cancer Stemness and Associations with Immune Response. - Weiwei Zhou; Minghai Su; Tiantongfei Jiang; Yunjin Xie; Jingyi Shi; Yingying Ma; Kang Xu; Gang Xu; Yongsheng Li 001; Juan Xu 001 (Genom. Proteom. Bioinform., 2024)