Analyzing gene perturbation screens with nested effects models in R and bioconductor. - Holger Fröhlich; Tim Beißbarth; Achim Tresch; Dennis Kostka; Juby Jacob; Rainer Spang; Florian Markowetz (Bioinform., 2008)

Detecting hierarchical structure in molecular characteristics of disease using transitive approximations of directed graphs. - Juby Jacob; Marcel Jentsch; Dennis Kostka; Stefan Bentink; Rainer Spang (Bioinform., 2008)