Next Generation Application Integration: Challenges and New Approaches. - Ian Gorton; Dave Thurman; Judi Thomson (COMPSAC, 2003)

Enterprise Middleware for Scientific Data. - Judi Thomson; Alan R. Chappell; Justin Almquist (ICEIS (1), 2003)

Evaluating Agent Architectures: Cougaar, Aglets and AAA. - Ian Gorton; Jereme Haack; David McGee; Andrew J. Cowell; Olga A. Kuchar; Judi Thomson (SELMAS, 2003)

Metadata's Role in a Scientific Archive. - Judi Thomson; Dan Adams; Paula J. Cowley; Kevin Walker (Computer, 2003)

Knowledge Signatures for Information Integration. - Judi Thomson; Andrew J. Cowell; Patrick R. Paulson; Scott Butner; Mark A. Whiting (OTM Workshops, 2004)

A typology for visualizing uncertainty. - Judi Thomson; Elizabeth Hetzler; Alan M. MacEachren; Mark Gahegan; Misha Pavel (Visualization and Data Analysis, 2005)