NITPICK: peak identification for mass spectrometry data. - Bernhard Y. Renard; Marc Kirchner; Hanno Steen; Judith A. J. Steen; Fred A. Hamprecht (BMC Bioinform., 2008)

Computational protein profile similarity screening for quantitative mass spectrometry experiments. - Marc Kirchner; Bernhard Y. Renard; Ullrich Köthe; Darryl J. Pappin; Fred A. Hamprecht; Hanno Steen; Judith A. J. Steen (Bioinform., 2010)

Deuteration distribution estimation with improved sequence coverage for HX/MS experiments. - Xinghua Lou; Marc Kirchner; Bernhard Y. Renard; Ullrich Köthe; Sebastian Boppel; Christian Graf 002; Chung-Tien Lee; Judith A. J. Steen; Hanno Steen; Matthias P. Mayer; Fred A. Hamprecht (Bioinform., 2010)

libfbi: a C++ implementation for fast box intersection and application to sparse mass spectrometry data. - Marc Kirchner; Buote Xu; Hanno Steen; Judith A. J. Steen (Bioinform., 2011)

A Practical Guide to the FLEXIQuant Method. - Sasha Singh; Marc Kirchner; Judith A. J. Steen; Hanno Steen (Quantitative Methods in Proteomics, 2012)