A systematic comparison of novel and existing differential analysis methods for CyTOF data. - Lis Arend; Judith Bernett; Quirin Manz; Melissa Klug; Olga Lazareva; Jan Baumbach; Dario Bongiovanni; Markus List (Briefings Bioinform., 2022)

Robust disease module mining via enumeration of diverse prize-collecting Steiner trees. - Judith Bernett; Dominik Krupke; Sepideh Sadegh; Jan Baumbach; Sándor P. Fekete; Tim Kacprowski; Markus List; David B. Blumenthal (Bioinform., 2022)

Cracking the black box of deep sequence-based protein-protein interaction prediction. - Judith Bernett; David B. Blumenthal; Markus List (Briefings Bioinform., 2024)