Classifying and Modeling Exceptions through Object Process Methodology. - Yudit Somekh; Mor Peleg; Dov Dori (ICSEM, 2007)

A methodology for eliciting and modeling exceptions. - Mor Peleg; Judith Somekh; Dov Dori (J. Biomed. Informatics, 2009)

Model verification framework with application to molecular biology. - Valeria Perelman; Judith Somekh; Dov Dori (SpringSim (TMS-DEVS), 2011)

OPM Model-Driven Animated Simulation with Computational Interface to Matlab. - Sergey Bolshchikov; Aharon Renick; Shay Mazor; Judith Somekh; Dov Dori (WETICE, 2011)

Presence-awareness: A conceptual model-based systems biology approach. - Yaniv Mordecai; Judith Somekh; Dov Dori (SMC, 2014)

Cognition-Based Visualization of the Dynamics of Conceptual Models: The Vivid OPM Scene Player. - Sergey Bolshchikov; Judith Somekh; Shay Mazor; Niva Wengrowicz; Mordechai Choder; Dov Dori (Syst. Eng., 2015)

A model-driven methodology for exploring complex disease comorbidities applied to autism spectrum disorder and inflammatory bowel disease. - Judith Somekh; Mor Peleg; Alal Eran; Itay Koren; Ariel Feiglin; Alik Demishtein; Ruth Shiloh; Monika Heiner; Sek Won Kong; Zvulun Elazar; Isaac S. Kohane (J. Biomed. Informatics, 2016)

Batch correction evaluation framework using a-priori gene-gene associations: applied to the GTEx dataset. - Judith Somekh; Shai S. Shen-Orr; Isaac S. Kohane (BMC Bioinform., 2019)

Model-based pathway enrichment analysis applied to the TGF-beta regulation of autophagy in autism. - Judith Somekh (J. Biomed. Informatics, 2021)