MADOKA: an ultra-fast approach for large-scale protein structure similarity searching. - Lei Deng 002; Guolun Zhong; Chenzhe Liu; Judong Luo; Hui Liu 026 (BMC Bioinform., 2019)

Predicting effective drug combinations using gradient tree boosting based on features extracted from drug-protein heterogeneous network. - Hui Liu 026; Wenhao Zhang; Lixia Nie; Xiancheng Ding; Judong Luo; Ling Zou 002 (BMC Bioinform., 2019)

Contrastive learning-based histopathological features infer molecular subtypes and clinical outcomes of breast cancer from unannotated whole slide images. - Hui Liu 026; Yang Zhang; Judong Luo (Comput. Biol. Medicine, 2024)

Predicting Single-Cell Drug Sensitivity Utilizing Adaptive Weighted Features for Multi-Source Domain Adaptation. - Hui Liu 026; Wei Duan; Judong Luo (IEEE J. Biomed. Health Informatics, 2025)