Model Library for Deformable Model-Based Segmentation of 3-D Brain MR-Images. - Juha Koikkalainen; Jyrki Lötjönen (MICCAI (1), 2002)

Individualized Geometric Model from Unorganized 3-D Points: An Application to Thorax Modeling. - Juha Koikkalainen; Jyrki Lötjönen (MICCAI (1), 2003)

Four-Chamber 3-D Statistical Shape Model from Cardiac Short-Axis and Long-Axis MR Images. - Jyrki Lötjönen; Juha Koikkalainen; Daniel Smutek; Sari Kivistö; Kirsi Lauerma (MICCAI (1), 2003)

Image Segmentation with the Combination of the PCA- and ICA-Based Modes of Shape Variation. - Juha Koikkalainen; Jyrki Lötjönen (ISBI, 2004)

Segmentation of Cardiac Structures Simultaneously from Short- and Long-Axis MR Images. - Juha Koikkalainen; Mika Pollari; Jyrki Lötjönen; Sari Kivistö; Kirsi Lauerma (MICCAI (1), 2004)

Statistical shape model of atria, ventricles and epicardium from short- and long-axis MR images. - Jyrki Lötjönen; Sari Kivistö; Juha Koikkalainen; Daniel Smutek; Kirsi Lauerma (Medical Image Anal., 2004)

Reconstruction of 3-D head geometry from digitized point sets: an evaluation study. - Juha Koikkalainen; Jyrki Lötjönen (IEEE Trans. Inf. Technol. Biomed., 2004)

Artificial Enlargement of a Training Set for Statistical Shape Models: Application to Cardiac Images. - Jyrki Lötjönen; Kari Antila; E. Lamminmäki; Juha Koikkalainen; Mikko Lilja; Timothy F. Cootes (FIMH, 2005)

Artificially Enlarged Training Set in Image Segmentation. - Tuomas Tölli; Juha Koikkalainen; Kirsi Lauerma; Jyrki Lötjönen (MICCAI (1), 2006)

Shape variability of the human striatum - Effects of age and gender. - Juha Koikkalainen; Jussi Hirvonen; Mikko Nyman; Jyrki Lötjönen; Jarmo Hietala; Ulla Ruotsalainen (NeuroImage, 2007)

Dynamic Probabilistic Atlas of Functional Brain Regions for Transcranial Magnetic Stimulation. - Juha Koikkalainen; Mervi Könönen; Jari Karhu; Jarmo Ruohonen; Eini Niskanen; Jyrki Lötjönen (MICCAI (1), 2008)

Methods of Artificial Enlargement of the Training Set for Statistical Shape Models. - Juha Koikkalainen; Tuomas Tölli; Kirsi Lauerma; Kari Antila; Elina M. Mattila; Mikko Lilja; Jyrki Lötjönen (IEEE Trans. Medical Imaging, 2008)

Atlas-Based Registration Parameters in Segmenting Sub-Cortical Regions from Brain MRI-Images. - Jyrki Lötjönen; Juha Koikkalainen; Daniel Rueckert (ISBI, 2009)

Searching for Linear Dependencies between Heart Magnetic Resonance Images and Lipid Profiles. - Marko Sysi-Aho; Juha Koikkalainen; Jyrki Lötjönen; Tuulikki Seppänen-Laakso; Hans Söderlund; Tiina Heliö; Matej Oresic (Algorithms and Applications, 2010)

Feature selection and time regression software: Application on predicting Alzheimer's disease progress. - Dimitrios Ververidis; Mark J. van Gils; Juha Koikkalainen; Jyrki Lötjönen (EUSIPCO, 2010)

Fast and robust multi-atlas segmentation of brain magnetic resonance images. - Jyrki Lötjönen; Robin Wolz; Juha Koikkalainen; Lennart Thurfjell; Gunhild Waldemar; Hilkka Soininen; Daniel Rueckert (NeuroImage, 2010)

Improved generation of probabilistic atlases for the expectation maximization classification. - Jyrki Lötjönen; Robin Wolz; Juha Koikkalainen; Lennart Thurfjell; Roger Lundqvist; Gunhild Waldemar; Hilkka Soininen; Daniel Rueckert (ISBI, 2011)

Multi-template tensor-based morphometry: Application to analysis of Alzheimer's disease. - Juha Koikkalainen; Jyrki Lötjönen; Lennart Thurfjell; Daniel Rueckert; Gunhild Waldemar; Hilkka Soininen (NeuroImage, 2011)

Fast and robust extraction of hippocampus from MR images for diagnostics of Alzheimer's disease. - Jyrki Lötjönen; Robin Wolz; Juha Koikkalainen; Valtteri Julkunen; Lennart Thurfjell; Roger Lundqvist; Gunhild Waldemar; Hilkka Soininen; Daniel Rueckert (NeuroImage, 2011)

Hippocampal atrophy rate using an expectation maximization classifier with a disease-specific prior. - Jyrki Lötjönen; Robin Wolz; Juha Koikkalainen; Valeria Manna; Christian Ledig; Lennart Thurfjell; Roger Lundqvist; Gunhild Waldemar; Hilkka Soininen; Daniel Rueckert (ISBI, 2012)

Simplified Reeb Graph as Effective Shape Descriptor for the Striatum. - Antonietta Pepe; Laura Brandolini; Marco Piastra; Juha Koikkalainen; Jarmo Hietala; Jussi Tohka (MeshMed, 2012)

Design and Application of a Generic Clinical Decision Support System for Multiscale Data. - Juha Koikkalainen; Arho Virkki; Mark J. van Gils; Jyrki Lötjönen; Jussi Mattila (IEEE Trans. Biomed. Eng., 2012)

Gradient cumulative filtering to detect MRI thermometry artifacts. - Juha M. Kortelainen; Juha Koikkalainen; Julius Koskela; Gosta Ehnholm (BIBE, 2013)

Automatic quantification of CT images for traumatic brain injury. - Juha Koikkalainen; Jyrki Lötjönen; Christian Ledig; Daniel Rueckert; Olli Tenovuo; David K. Menon (ISBI, 2014)

Consistent and robust 4D whole-brain segmentation: Application to traumatic brain injury. - Christian Ledig; Wenzhe Shi; Antonios Makropoulos; Juha Koikkalainen; Rolf A. Heckemann; Alexander Hammers; Jyrki Lötjönen; Olli Tenovuo; Daniel Rueckert (ISBI, 2014)

Extended boundary shift integral. - Jyrki Lötjönen; Christian Ledig; Juha Koikkalainen; Robin Wolz; Lennart Thurfjell; Hilkka Soininen; Sébastien Ourselin; Daniel Rueckert (ISBI, 2014)

Differential Dementia Diagnosis on Incomplete Data with Latent Trees. - Christian Ledig; Sebastian Kaltwang; Antti Tolonen; Juha Koikkalainen; Philip Scheltens; Frederik Barkhof; Hanneke Rhodius-Meester; Betty M. Tijms; Afina W. Lemstra; Wiesje M. van der Flier; Jyrki Lötjönen; Daniel Rueckert (MICCAI (2), 2016)

A Decision Support System for Diagnostics and Treatment Planning in Traumatic Brain Injury. - Adil Umer; Jussi Mattila; Hilkka Liedes; Juha Koikkalainen; Jyrki Lötjönen; Ari Katila; Janek Frantzen; Virginia F. J. Newcombe; Olli Tenovuo; David K. Menon; Mark J. van Gils (IEEE J. Biomed. Health Informatics, 2019)