On the unification of syntactic annotations under the Stanford dependency scheme: A case study on BioInfer and GENIA. - Sampo Pyysalo; Filip Ginter; Veronika Laippala; Katri Haverinen; Juho Heimonen; Tapio Salakoski (BioNLP@ACL, 2007)

BioInfer: a corpus for information extraction in the biomedical domain. - Sampo Pyysalo; Filip Ginter; Juho Heimonen; Jari Björne; Jorma Boberg; Jouni Järvinen; Tapio Salakoski (BMC Bioinform., 2007)

Comparative analysis of five protein-protein interaction corpora. - Sampo Pyysalo; Antti Airola; Juho Heimonen; Jari Björne; Filip Ginter; Tapio Salakoski (BMC Bioinform., 2008)

Extracting Complex Biological Events with Rich Graph-Based Feature Sets. - Jari Björne; Juho Heimonen; Filip Ginter; Antti Airola; Tapio Pahikkala; Tapio Salakoski (BioNLP@HLT-NAACL (Shared Task), 2009)

Learning to Extract Biological Event and Relation Graphs. - Jari Björne; Filip Ginter; Juho Heimonen; Sampo Pyysalo; Tapio Salakoski (NODALIDA, 2009)

Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain. - Juho Heimonen; Jari Björne; Tapio Salakoski (BioNLP@ACL, 2010)

Extracting Contextualized Complex Biological Events with Rich Graph-Based Feature Sets. - Jari Björne; Juho Heimonen; Filip Ginter; Antti Airola; Tapio Pahikkala; Tapio Salakoski (Comput. Intell., 2011)

An Ontology to Improve Accessibility and Quality of Patient Instructions. - Juho Heimonen; Tapio Salakoski; Sanna Salanterä (CLEF (Online Working Notes/Labs/Workshop), 2012)

Avoiding Hazards - What Can Health Care Learn from Aviation? - Olli Sjöblom; Juho Heimonen; Lotta Kauhanen; Veronika Laippala; Heljä Lundgrén-Laine; Laura-Maria Murtola; Tapio Salakoski; Sanna Salanterä (WIS, 2012)

Using cluster analysis to identify weak signals of lethal trends in aviation and healthcare documentation. - Olli Sjöblom; Laura-Maria Murtola; Juho Heimonen; Lotta Kauhanen; Veronika Laippala; Heljä Lundgrén-Laine; Tapio Salakoski; Sanna Salanterä (Int. J. Netw. Virtual Organisations, 2013)

On Evaluation of Automatically Generated Clinical Discharge Summaries. - Hans Moen; Juho Heimonen; Laura-Maria Murtola; Antti Airola; Tapio Pahikkala; Virpi Terävä; Riitta Danielsson-Ojala; Tapio Salakoski; Sanna Salanterä (PAHI, 2014)

Properties of Object-Level Cross-Validation Schemes for Symmetric Pair-Input Data. - Juho Heimonen; Tapio Salakoski; Tapio Pahikkala (S+SSPR, 2014)

Documentation of the Clinical Phase of the Cardiac Rehabilitation Process in a Finnish University Hospital District. - Lotta Kauhanen; Laura-Maria Murtola; Juho Heimonen; Tuija Leskinen; Kari Kalliokoski; Elina Raivo; Tapio Salakoski; Sanna Salanterä (WIS, 2014)

Comparison of automatic summarisation methods for clinical free text notes. - Hans Moen; Laura-Maria Peltonen; Juho Heimonen; Antti Airola; Tapio Pahikkala; Tapio Salakoski; Sanna Salanterä (Artif. Intell. Medicine, 2016)

Propagating AI Knowledge Across University Disciplines- The Design of A Multidisciplinary AI Study Module. - Samuli Laato; Henna Vilppu; Juho Heimonen; Antti Hakkala; Jari Björne; Ali Farooq 001; Tapio Salakoski; Antti Airola (FIE, 2020)