Robust Scoring Functions for Protein-Ligand Interactions with Quantum Chemical Charge Models. - Jui-Chih Wang; Jung-Hsin Lin; Chung-Ming Chen; Alex L. Perryman; Arthur J. Olson (J. Chem. Inf. Model., 2011)

idTarget: a web server for identifying protein targets of small chemical molecules with robust scoring functions and a divide-and-conquer docking approach. - Jui-Chih Wang; Pei-Ying Chu; Chung-Ming Chen; Jung-Hsin Lin (Nucleic Acids Res., 2012)

Enhancement of Initial Equivalency for Protein Structure Alignment Based on Encoded Local Structures. - Kenneth Hung; Jui-Chih Wang; Cheng-Wei Chen; Cheng-Long Chuang; Kun-Nan Tsai; Chung-Ming Chen (IEEE Trans. Inf. Technol. Biomed., 2012)