Modeling Systems-Level Regulation of Host Immune Responses. - Juilee Thakar; Mylisa Pilione; Girish Kirimanjeswara; Eric T. Harvill; Réka Albert (PLoS Comput. Biol., 2007)

Modelling phagosomal lipid networks that regulate actin assembly. - Mark Kühnel; Luis S. Mayorga; Thomas Dandekar; Juilee Thakar; Roland Schwarz 002; Elsa Anes; Gareth Griffiths 003; Jens G. Reich (BMC Syst. Biol., 2008)

Boolean network simulations for life scientists. - István Albert; Juilee Thakar; Song Li; Ranran Zhang; Réka Albert (Source Code Biol. Medicine, 2008)

Network Model of Immune Responses Reveals Key Effectors to Single and Co-infection Dynamics by a Respiratory Bacterium and a Gastrointestinal Helminth. - Juilee Thakar; Ashutosh K. Pathak; Lisa Murphy; Réka Albert; Isabella M. Cattadori (PLoS Comput. Biol., 2012)

Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection. - Elena Zaslavsky; German Nudelman; Susanna Marquez; Uri Hershberg; Boris M. Hartmann; Juilee Thakar; Stuart C. Sealfon; Steven H. Kleinstein (BMC Bioinform., 2013)

GESPA: classifying nsSNPs to predict disease association. - Jay Khurana; Jay Reeder; Antony Shrimpton; Juilee Thakar (BMC Bioinform., 2015)

Boolean Modeling of Cellular and Molecular Pathways Involved in Influenza Infection. - Christopher S. Anderson; Marta L. DeDiego; David J. Topham; Juilee Thakar (Comput. Math. Methods Medicine, 2016)

FUNNEL-GSEA: FUNctioNal ELastic-net regression in time-course gene set enrichment analysis. - Yun Zhang 021; David J. Topham; Juilee Thakar; Xing Qiu (Bioinform., 2017)

Meta-analysis of cell- specific transcriptomic data using fuzzy c-means clustering discovers versatile viral responsive genes. - Atif Ali Khan; Dejan Katanic; Juilee Thakar (BMC Bioinform., 2017)

Executable pathway analysis using ensemble discrete-state modeling for large-scale data. - Rohith Palli; Mukta G. Palshikar; Juilee Thakar (PLoS Comput. Biol., 2019)

SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems. - Andreas Dräger; Tomás Helikar; Matteo Barberis; Marc R. Birtwistle; Laurence Calzone; Claudine Chaouiya; Jan Hasenauer; Jonathan R. Karr; Anna Niarakis; María Rodríguez Martínez; Julio Saez-Rodriguez; Juilee Thakar (Bioinform., 2021)

A systems genomics approach uncovers molecular associates of RSV severity. - Matthew N. McCall; Chin-Yi Chu; Lu Wang; Lauren Benoodt; Juilee Thakar; Anthony Corbett; Jeanne Holden-Wiltse; Christopher Slaunwhite; Alex Grier; Steven R. Gill; Ann R. Falsey; David J. Topham; et al. (PLoS Comput. Biol., 2021)

WikiNetworks: translating manually created biological pathways for topological analysis. - Mukta G. Palshikar; Shannon P. Hilchey; Martin S. Zand; Juilee Thakar (Bioinform., 2022)

Computational modelling in health and disease: highlights of the 6th annual SysMod meeting. - Anna Niarakis; Juilee Thakar; Matteo Barberis; María Rodríguez Martínez; Tomás Helikar; Marc R. Birtwistle; Claudine Chaouiya; Laurence Calzone; Andreas Dräger (Bioinform., 2022)