Designing a Simulation Model of a Self-Maintaining Cellular System. - Kepa Ruiz-Mirazo; Alvaro Moreno; Federico Morán; Juli Peretó; Juan Julián Merelo Guervós (ECAL, 1999)

Proposal of a Minimal Genome for Bacterial Life. - Rosario Gil 002; Francisco J. Silva; Juli Peretó; Andrés Moya (Spanish Bioinformatics Conference, 2004)

Solving gap metabolites and blocked reactions in genome-scale models: application to the metabolic network of Blattabacterium cuenoti. - Miguel Ponce de Leon; Francisco Montero 002; Juli Peretó (BMC Syst. Biol., 2013)

Herrera's 'Plasmogenia' and Other Collected Works - Early Writings on the Experimental Study of the Origin of Life. - Henderson James Cleaves II; Antonio Lazcano; Ismael Ledesma Mateos; Alicia Negrón-Mendoza; Juli Peretó; Ervin Silva (Springer, 2014)

Prokaryotic symbiotic consortia and the origin of nucleated cells: A critical review of Lynn Margulis hypothesis. - Antonio Lazcano; Juli Peretó (Biosyst., 2021)