Genome-scale reconstruction and system level investigation of the metabolic network of Methylobacterium extorquens AM1. - Rémi Peyraud; Kathrin Schneider; Patrick Kiefer; Stéphane Massou; Julia A. Vorholt; Jean-Charles Portais (BMC Syst. Biol., 2011)

eMZed: an open source framework in Python for rapid and interactive development of LC/MS data analysis workflows. - Patrick Kiefer; Uwe Schmitt; Julia A. Vorholt (Bioinform., 2013)

Functional overlap of the Arabidopsis leaf and root microbiota. - Yang Bai 003; Daniel B. Müller; Girish Srinivas; Ruben Garrido-Oter; Eva Potthoff; Matthias Rott; Nina Dombrowski; Philipp C. Münch; Stijn Spaepen; Mitja Remus-Emsermann; Bruno Hüttel; Alice C. McHardy; et al. (Nat., 2015)

ScalaFlux: A scalable approach to quantify fluxes in metabolic subnetworks. - Pierre Millard; Uwe Schmitt; Patrick Kiefer; Julia A. Vorholt; Stéphanie Heux; Jean-Charles Portais (PLoS Comput. Biol., 2020)

mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants, and isogenic strain populations. - Anna Sintsova; Hans-Joachim Ruscheweyh; Christopher M. Field; Lilith Feer; Bidong D. Nguyen; Benjamin Daniel; Wolf-Dietrich Hardt; Julia A. Vorholt; Shinichi Sunagawa (Bioinform., 2024)

Dashing Growth Curves: a web application for rapid and interactive analysis of microbial growth curves. - Michael A. Reiter; Julia A. Vorholt (BMC Bioinform., 2024)