MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets. - Véronique Hourdel; Stevenn Volant; Darragh P. O'Brien; Alexandre Chenal; Julia Chamot-Rooke; Marie-Agnès Dillies; Sébastien Brier (Bioinform., 2016)

DiagnoProt: a tool for discovery of new molecules by mass spectrometry. - André Ramos Fernandes Da Silva; Diogo B. Lima; Alejandro Leyva; Rosario Durán; Carlos Batthyany; Priscila F. Aquino; Juliana C. Leal; Jimmy E. Rodriguez; Gilberto B. Domont; Marlon D. M. Santos; Julia Chamot-Rooke; Valmir C. Barbosa; et al. (Bioinform., 2017)

Top-Down Garbage Collector: a tool for selecting high-quality top-down proteomics mass spectra. - Diogo B. Lima; André Ramos Fernandes Da Silva; Mathieu Dupré; Marlon D. M. Santos; Milan A. Clasen; Louise U. Kurt; Priscila F. Aquino; Valmir C. Barbosa; Paulo C. Carvalho; Julia Chamot-Rooke (Bioinform., 2019)

ProteoCombiner: integrating bottom-up with top-down proteomics data for improved proteoform assessment. - Diogo B. Lima; Mathieu Dupré; Magalie Duchateau; Quentin Giai Gianetto; Martial Rey; Mariette Matondo; Julia Chamot-Rooke (Bioinform., 2021)

TDFragMapper: a visualization tool for evaluating experimental parameters in top-down proteomics. - Jonathan Dhenin; Diogo B. Lima; Mathieu Dupré; Julia Chamot-Rooke (Bioinform., 2022)