Toric Ideals of Phylogenetic Invariants for the General Group-Based Model on Claw Trees K 1, n . - Julia Chifman; Sonja Petrovic (AB, 2007)

Quartet Inference from SNP Data Under the Coalescent Model. - Julia Chifman; Laura Salter Kubatko (Bioinform., 2014)

Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective. - Julia Chifman; Seda Arat; Zhiyong Deng; Erica Lemler; James C. Pino; Leonard A. Harris; Michael A. Kochen; Carlos F. Lopez; Steven A. Akman; Frank M. Torti; Suzy V. Torti; Reinhard C. Laubenbacher (PLoS Comput. Biol., 2017)

SteadyCellPhenotype: a web-based tool for the modeling of biological networks with ternary logic. - Adam C. Knapp; Luis Sordo Vieira; Reinhard C. Laubenbacher; Julia Chifman (Bioinform., 2022)

A phylogenetic approach to inferring the order in which mutations arise during cancer progression. - Yuan Gao; Jeff Gaither; Julia Chifman; Laura Salter Kubatko (PLoS Comput. Biol., 2022)