Improved prediction of trans-membrane spans in proteins using an artificial neural network. - Julia Koehler; Ralf Mueller; Jens Meiler (CIBCB, 2009)

An Integrated Framework Advancing Membrane Protein Modeling and Design. - Rebecca F. Alford; Julia Koehler Leman; Brian D. Weitzner; Amanda M. Duran; Drew C. Tilley; Assaf Elazar; Jeffrey J. Gray (PLoS Comput. Biol., 2015)

Combining Evolutionary Information and an Iterative Sampling Strategy for Accurate Protein Structure Prediction. - Tatjana Braun; Julia Koehler Leman; Oliver F. Lange (PLoS Comput. Biol., 2015)

Expanding the toolkit for membrane protein modeling in Rosetta. - Julia Koehler Leman; Benjamin K. Mueller; Jeffrey J. Gray (Bioinform., 2017)

Computing structure-based lipid accessibility of membrane proteins with mp_lipid_acc in RosettaMP. - Julia Koehler Leman; Sergey Lyskov; Richard Bonneau (BMC Bioinform., 2017)

Brick plots: an intuitive platform for visualizing multiparametric immunophenotyped cell clusters. - Samuel E. Norton; Julia Koehler Leman; Tiffany Khong; Andrew Spencer; Barbara Fazekas de St Groth; Helen M. McGuire; Roslyn A. Kemp (BMC Bioinform., 2020)

Better together: Elements of successful scientific software development in a distributed collaborative community. - Julia Koehler Leman; Brian D. Weitzner; P. Douglas Renfrew; Steven M. Lewis; Rocco Moretti; Andrew M. Watkins; Vikram Khipple Mulligan; Sergey Lyskov; Jared Adolf-Bryfogle; Jason W. Labonte; Justyna Krys; RosettaCommons Consortium; et al. (PLoS Comput. Biol., 2020)

CCI+SSS, A New SMOS L2 Reprocessing Reduces Errors on Sea Surface Salinity Time Series. - Xavier Perrot; Jacqueline Boutin; Jean-Luc Vergely; Frederic Rouffi; Adrien Martin; Sébastien Guimbard; Julia Koehler; Nicolas Reul; Rafael Catany; Paolo Cipollini; Roberto Sabia (IGARSS, 2021)

Docking cholesterol to integral membrane proteins with Rosetta. - Brennica Marlow; Georg Kuenze; Jens Meiler; Julia Koehler Leman (PLoS Comput. Biol., 2023)