AltHapAlignR: improved accuracy of RNA-seq analyses through the use of alternative haplotypes. - Wanseon Lee; Katharine Plant; Peter Humburg; Julian C. Knight (Bioinform., 2018)

Using de novo assembly to identify structural variation of eight complex immune system gene regions. - Jiayuan Zhang; Hannah Roberts; David S. C. Flores; Antony J. Cutler; Andrew C. Brown; Justin P. Whalley; Olga Mielczarek; David Buck; Helen Lockstone; Barbara Xella; Karen Oliver; Craig Corton; et al. (PLoS Comput. Biol., 2021)

Priority index: database of genetic targets in immune-mediated disease. - Hai Fang; Julian C. Knight (Nucleic Acids Res., 2022)

COMBATdb: a database for the COVID-19 Multi-Omics Blood ATlas. - Dapeng Wang; Vinod Kumar; Katie L. Burnham; Alexander J. Mentzer; Brian D. Marsden; Julian C. Knight (Nucleic Acids Res., 2023)