Low-Rank Optimal Transport through Factor Relaxation with Latent Coupling. - Peter Halmos; Xinhao Liu 009; Julian Gold; Benjamin J. Raphael (NeurIPS, 2024)

DeST-OT: Alignment of Spatiotemporal Transcriptomics Data. - Peter Halmos; Xinhao Liu 009; Julian Gold; Feng Chen; Li Ding; Benjamin J. Raphael (RECOMB, 2024)

A count-based model for delineating cell-cell interactions in spatial transcriptomics data. - Hirak Sarkar; Uthsav Chitra; Julian Gold; Benjamin J. Raphael (Bioinform., 2024)

Learning Latent Trajectories in Developmental Time Series with Hidden-Markov Optimal Transport. - Peter Halmos; Julian Gold; Xinhao Liu 009; Benjamin J. Raphael (RECOMB, 2025)

Hierarchical Refinement: Optimal Transport to Infinity and Beyond. - Peter Halmos; Julian Gold; Xinhao Liu 009; Benjamin J. Raphael (CoRR, 2025)