An insight into domain combinations. - Gordana Apic; Julian Gough; Sarah A. Teichmann (ISMB (Supplement of Bioinformatics), 2001)

SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments. - Julian Gough; Cyrus Chothia (Nucleic Acids Res., 2002)

The SUPERFAMILY database in 2004: additions and improvements. - Martin Madera; Christine Vogel; Sarah K. Kummerfeld; Cyrus Chothia; Julian Gough (Nucleic Acids Res., 2004)

Convergent evolution of domain architectures (is rare). - Julian Gough (Bioinform., 2005)

InterPro, progress and status in 2005. - Nicola J. Mulder; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Paul Bradley; Peer Bork; Phillip Bucher; Lorenzo Cerutti; Richard R. Copley; Emmanuel Courcelle; et al. (Nucleic Acids Res., 2005)

New developments in the InterPro database. - Nicola J. Mulder; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Peer Bork; Virginie Buillard; Lorenzo Cerutti; Richard R. Copley; Emmanuel Courcelle; Ujjwal Das; et al. (Nucleic Acids Res., 2007)

The SUPERFAMILY database in 2007: families and functions. - Derek Wilson; Martin Madera; Christine Vogel; Cyrus Chothia; Julian Gough (Nucleic Acids Res., 2007)

InterPro: the integrative protein signature database. - Sarah Hunter; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Peer Bork; Ujjwal Das; Louise C. Daugherty; Lauranne Duquenne; Robert D. Finn; Julian Gough; et al. (Nucleic Acids Res., 2009)

SUPERFAMILY - sophisticated comparative genomics, data mining, visualization and phylogeny. - Derek Wilson; Ralph Pethica; Yiduo Zhou; Charles Talbot; Christine Vogel; Martin Madera; Cyrus Chothia; Julian Gough (Nucleic Acids Res., 2009)

Improving protein secondary structure prediction using a simple k-mer model. - Martin Madera; Ryan Calmus; Grant Thiltgen; Kevin Karplus; Julian Gough (Bioinform., 2010)

SUPERFAMILY 1.75 including a domain-centric gene ontology method. - David A. de Lima Morais; Hai Fang; Owen J. L. Rackham; Derek Wilson; Ralph Pethica; Cyrus Chothia; Julian Gough (Nucleic Acids Res., 2011)

InterPro in 2011: new developments in the family and domain prediction database. - Sarah Hunter; Philip Jones; Alex L. Mitchell; Rolf Apweiler; Teresa K. Attwood; Alex Bateman; Thomas Bernard; David Binns; Peer Bork; Sarah W. Burge; Edouard De Castro; Penny C. Coggill; et al. (Nucleic Acids Res., 2012)

Predicting the functional consequences of cancer-associated amino acid substitutions. - Hashem A. Shihab; Julian Gough; David N. Cooper; Ian N. M. Day; Tom R. Gaunt (Bioinform., 2013)

A domain-centric solution to functional genomics via dcGO Predictor. - Hai Fang; Julian Gough (BMC Bioinform., 2013)

dcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more. - Hai Fang; Julian Gough (Nucleic Acids Res., 2013)

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains. - Tony E. Lewis; Ian Sillitoe; Antonina Andreeva; Tom L. Blundell; Daniel W. A. Buchan; Cyrus Chothia; Alison L. Cuff; Jose M. Dana; Ioannis Filippis; Julian Gough; Sarah Hunter; David T. Jones; et al. (Nucleic Acids Res., 2013)

D2P2: database of disordered protein predictions. - Matt E. Oates; Pedro Romero; Takashi Ishida 002; Mohamed F. Ghalwash; Marcin J. Mizianty; Bin Xue; Zsuzsanna Dosztányi; Vladimir N. Uversky; Zoran Obradovic; Lukasz A. Kurgan; A. Keith Dunker; Julian Gough (Nucleic Acids Res., 2013)

A promoter-level mammalian expression atlas. - Fantom Consortium; RIKEN PMII; RIKEN CLST (DGT); Alistair R. R. Forrest; Hideya Kawaji; Michael Rehli; J. Kenneth Baillie; Michiel J. L. de Hoon; Vanja Haberle; Timo Lassmann; Ivan V. Kulakovskiy; Marina Lizio; et al. (Nat., 2014)

An integrative approach to predicting the functional effects of non-coding and coding sequence variation. - Hashem A. Shihab; Mark F. Rogers; Julian Gough; Matthew E. Mort; David N. Cooper; Ian N. M. Day; Tom R. Gaunt; Colin Campbell (Bioinform., 2015)

Genome3D: exploiting structure to help users understand their sequences. - Tony E. Lewis; Ian Sillitoe; Antonina Andreeva; Tom L. Blundell; Daniel W. A. Buchan; Cyrus Chothia; Domenico Cozzetto; Jose M. Dana; Ioannis Filippis; Julian Gough; David T. Jones; Lawrence A. Kelley; et al. (Nucleic Acids Res., 2015)

The InterPro protein families database: the classification resource after 15 years. - Alex L. Mitchell; Hsin-Yu Chang; Louise C. Daugherty; Matthew Fraser; Sarah Hunter; Rodrigo Lopez; Craig McAnulla; Conor McMenamin; Gift Nuka; Sebastien Pesseat; Amaia Sangrador-Vegas; Maxim Scheremetjew; et al. (Nucleic Acids Res., 2015)

The SUPERFAMILY 1.75 database in 2014: a doubling of data. - Matt E. Oates; Jonathan Stahlhacke; Dimitrios V. Vavoulis; Ben Smithers; Owen J. L. Rackham; Adam J. Sardar; Jan Zaucha; Natalie Thurlby; Hai Fang; Julian Gough (Nucleic Acids Res., 2015)

InterPro in 2017 - beyond protein family and domain annotations. - Robert D. Finn; Teresa K. Attwood; Patricia C. Babbitt; Alex Bateman; Peer Bork; Alan J. Bridge; Hsin-Yu Chang; Zsuzsanna Dosztányi; Sara El-Gebali; Matthew Fraser; Julian Gough; David Haft; et al. (Nucleic Acids Res., 2017)

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals. - Marina Lizio; Jayson Harshbarger; Imad Abugessaisa; Shuei Noguchi; Atsushi Kondo; Jessica Severin; Chris Mungall; David J. Arenillas; Anthony Mathelier; Yulia A. Medvedeva; Andreas Lennartsson; Finn Drabløs; et al. (Nucleic Acids Res., 2017)

InterPro in 2019: improving coverage, classification and access to protein sequence annotations. - Alex L. Mitchell; Teresa K. Attwood; Patricia C. Babbitt; Matthias Blum; Peer Bork; Alan J. Bridge; Shoshana D. Brown; Hsin-Yu Chang; Sara El-Gebali; Matthew Fraser; Julian Gough; David Haft; et al. (Nucleic Acids Res., 2019)

The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver. - Arun Prasad Pandurangan; Jonathan Stahlhacke; Matt E. Oates; Ben Smithers; Julian Gough (Nucleic Acids Res., 2019)

The SCOP database in 2020: expanded classification of representative family and superfamily domains of known protein structures. - Antonina Andreeva; Eugene Kulesha; Julian Gough; Alexey G. Murzin (Nucleic Acids Res., 2020)

Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation. - Ian Sillitoe; Antonina Andreeva; Tom L. Blundell; Daniel W. A. Buchan; Robert D. Finn; Julian Gough; David T. Jones; Lawrence A. Kelley; Typhaine Paysan-Lafosse; Su Datt Lam; Alexey G. Murzin; Arun Prasad Pandurangan; et al. (Nucleic Acids Res., 2020)

The InterPro protein families and domains database: 20 years on. - Matthias Blum; Hsin-Yu Chang; Sara Chuguransky; Tiago Grego; Swaathi Kandasamy; Alex L. Mitchell; Gift Nuka; Typhaine Paysan-Lafosse; Matloob Qureshi; Shriya Raj; Lorna J. Richardson; Gustavo A. Salazar; et al. (Nucleic Acids Res., 2021)

InterPro in 2022. - Typhaine Paysan-Lafosse; Matthias Blum; Sara Chuguransky; Tiago Grego; Beatriz Lázaro Pinto; Gustavo A. Salazar; Maxwell L. Bileschi; Peer Bork; Alan J. Bridge; Lucy J. Colwell; Julian Gough; Daniel H. Haft; et al. (Nucleic Acids Res., 2023)