Whole Brain Vessel Graphs: A Dataset and Benchmark for Graph Learning and Neuroscience. - Johannes C. Paetzold; Julian McGinnis; Suprosanna Shit; Ivan Ezhov; Paul Büschl; Chinmay Prabhakar; Anjany Sekuboyina; Mihail I. Todorov; Georgios Kaissis; Ali Ertürk; Stephan Günnemann; Bjoern H. Menze (NeurIPS Datasets and Benchmarks, 2021)

Whole Brain Vessel Graphs: A Dataset and Benchmark for Graph Learning and Neuroscience (VesselGraph). - Johannes C. Paetzold; Julian McGinnis; Suprosanna Shit; Ivan Ezhov; Paul Büschl; Chinmay Prabhakar; Mihail I. Todorov; Anjany Sekuboyina; Georgios Kaissis; Ali Ertürk; Stephan Günnemann; Bjoern H. Menze (CoRR, 2021)

NISF: Neural Implicit Segmentation Functions. - Nil Stolt Ansó; Julian McGinnis; Jiazhen Pan; Kerstin Hammernik; Daniel Rueckert (MICCAI (4), 2023)

Single-subject Multi-contrast MRI Super-resolution via Implicit Neural Representations. - Julian McGinnis; Suprosanna Shit; Hongwei Bran Li; Vasiliki Sideri-Lampretsa; Robert Graf; Maik Dannecker; Jiazhen Pan; Nil Stolt Ansó; Mark Mühlau; Jan S. Kirschke; Daniel Rueckert; Benedikt Wiestler (MICCAI (8), 2023)

Multi-contrast MRI Super-resolution via Implicit Neural Representations. - Julian McGinnis; Suprosanna Shit; Hongwei Bran Li; Vasiliki Sideri-Lampretsa; Robert Graf; Maik Dannecker; Jiazhen Pan; Nil Stolt Ansó; Mark Mühlau; Jan S. Kirschke; Daniel Rueckert; Benedikt Wiestler (CoRR, 2023)

Modeling the acquisition shift between axial and sagittal MRI for diffusion superresolution to enable axial spine segmentation. - Robert Graf; Hendrik Kristian Möller; Julian McGinnis; Sebastian Rühling; Maren Weihrauch; Matan Atad; Suprosanna Shit; Bjoern H. Menze; Mark Mühlau; Johannes C. Paetzold; Daniel Rueckert; Jan Kirschke (MIDL, 2024)

SINR: Spline-enhanced implicit neural representation for multi-modal registration. - Vasiliki Sideri-Lampretsa; Julian McGinnis; Huaqi Qiu; Magdalini Paschali; Walter Simson; Daniel Rueckert (MIDL, 2024)

Image registration is a geometric deep learning task. - Vasiliki Sideri-Lampretsa; Nil Stolt Ansó; Martin J. Menten; Huaqi Qiu; Julian McGinnis; Daniel Rueckert (CoRR, 2024)

Towards quantitative intensity analysis of conventional T1-weighted images in multiple sclerosis. - Tun Wiltgen; Julian McGinnis; Ronja C. Berg; Cui Ci Voon; Oula Puonti; Katrin Giglhuber; Carl Ganter; Claus Zimmer; Bernhard Hemmer; Benedikt Wiestler; Jan Kirschke; Christine Preibisch; et al. (NeuroImage, 2025)