Learning epistatic interactions from sequence-activity data to predict enantioselectivity. - Julian Zaugg; Yosephine Gumulya; Alpeshkumar K. Malde; Mikael Bodén (J. Comput. Aided Mol. Des., 2017)

Effect of Binding on Enantioselectivity of Epoxide Hydrolase. - Julian Zaugg; Yosephine Gumulya; Mikael Bodén; Alan E. Mark; Alpeshkumar K. Malde (J. Chem. Inf. Model., 2018)

NLSdb - major update for database of nuclear localization signals and nuclear export signals. - Michael Bernhofer; Tatyana Goldberg; Silvana Wolf; Mohamed Ahmed; Julian Zaugg; Mikael Bodén; Burkhard Rost (Nucleic Acids Res., 2018)

Engineering indel and substitution variants of diverse and ancient enzymes using Graphical Representation of Ancestral Sequence Predictions (GRASP). - Gabriel Foley; Ariane Mora; Connie M. Ross; Scott Bottoms; Leander Sützl; Marnie L. Lamprecht; Julian Zaugg; Alexandra Essebier; Brad Balderson; Rhys Newell; Raine E. S. Thomson; Bostjan Kobe; et al. (PLoS Comput. Biol., 2022)