Improving model construction of profile HMMs for remote homology detection through structural alignment. - Juliana S. Bernardes; Alberto M. R. Dávila; Vítor Santos Costa; Gerson Zaverucha (BMC Bioinform., 2007)

A study of structural properties on profiles HMMs - Juliana S. Bernardes; Alberto M. R. Dávila; Vítor Santos Costa; Gerson Zaverucha (CoRR, 2007)

Structural descriptor database: a new tool for sequence-based functional site prediction. - Juliana S. Bernardes; Jorge H. Fernandez; Ana Tereza Ribeiro de Vasconcelos (BMC Bioinform., 2008)

A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models. - Juliana S. Bernardes; Alessandra Carbone; Gerson Zaverucha (BMC Bioinform., 2011)

Combining evolution and machine learning for functional annotation and classification of remote homologous proteins. (Evolution et apprentissage automatique pour l'annotation fonctionnelle et la classification des homologies lointains en protéines). - Juliana S. Bernardes (2012)

Evaluation and improvements of clustering algorithms for detecting remote homologous protein families. - Juliana S. Bernardes; Fabio R. J. Vieira; Lygia Costa; Gerson Zaverucha (BMC Bioinform., 2015)

A multi-objective optimization approach accurately resolves protein domain architectures. - Juliana S. Bernardes; Fabio R. J. Vieira; Gerson Zaverucha; Alessandra Carbone (Bioinform., 2016)

Improvement in Protein Domain Identification Is Reached by Breaking Consensus, with the Agreement of Many Profiles and Domain Co-occurrence. - Juliana S. Bernardes; Gerson Zaverucha; Catherine Vaquero; Alessandra Carbone (PLoS Comput. Biol., 2016)

Meet-U: Educating through research immersion. - Nika Abdollahi; Alexandre Albani; Éric Anthony; Agnes Baud; Mélissa Cardon; Robert Clerc; Dariusz Czernecki; Romain Conte; Laurent David; Agathe Delaune; Samia Djerroud; Pauline Fourgoux; et al. (PLoS Comput. Biol., 2018)

A multi-objective based clustering for inferring BCR clonal lineages from high-throughput B cell repertoire data. - Nika Abdollahi; Lucile Jeusset; Anne Langlois De Septenville; Hugues Ripoche; Frédéric Davi; Juliana S. Bernardes (PLoS Comput. Biol., 2022)

Multi-Objective Wrapper Differential Evolution with Guided Initial Population for Feature Selection. - Gabriel Dominico; Juliana S. Bernardes; Leonardo Da Luz Dorneles; Márcio Dorn (CEC, 2023)

Reconstructing B cell lineage trees with minimum spanning tree and genotype abundances. - Nika Abdollahi; Lucile Jeusset; Anne Langlois De Septenville; Frédéric Davi; Juliana S. Bernardes (BMC Bioinform., 2023)