Critical-like self-organization and natural selection: Two facets of a single evolutionary process? - Julianne D. Halley; David A. Winkler (Biosyst., 2008)

Classification of emergence and its relation to self-organization. - Julianne D. Halley; David A. Winkler (Complex., 2008)

Consistent concepts of self-organization and self-assembly. - Julianne D. Halley; David A. Winkler (Complex., 2008)

Predictive Mesoscale Network Model of Cell Fate Decisions during C. elegans Embryogenesis. - David A. Winkler; Frank R. Burden; Julianne D. Halley (Artif. Life, 2009)

A conceptual and computational framework for modelling and understanding the non-equilibrium gene regulatory networks of mouse embryonic stem cells. - Richard B. Greaves; Sabine Dietmann; Austin Smith; Susan Stepney; Julianne D. Halley (PLoS Comput. Biol., 2017)