A more accurate numerical max-convolution method for sub-quadratic Bayesian inference with additive factors. - Julianus Pfeuffer; Oliver Serang (CoRR, 2015)

A Bounded p-norm Approximation of Max-Convolution for Sub-Quadratic Bayesian Inference on Additive Factors. - Julianus Pfeuffer; Oliver Serang (J. Mach. Learn. Res., 2016)

BioContainers: an open-source and community-driven framework for software standardization. - Felipe da Veiga Leprevost; Björn A. Grüning; Saulo Aflitos; Hannes L. Röst; Julian Uszkoreit; Harald Barsnes; Marc Vaudel; Pablo A. Moreno; Laurent Gatto; Jonas Weber; Mingze Bai; Rafael C. Jiménez; et al. (Bioinform., 2017)

The PRIDE database and related tools and resources in 2019: improving support for quantification data. - Yasset Pérez-Riverol; Attila Csordas; Jingwen Bai 003; Manuel Bernal Llinares; Suresh Hewapathirana; Deepti Jaiswal Kundu; Avinash Inuganti; Johannes Griss; Gerhard Mayer; Martin Eisenacher; Enrique Pérez; Julian Uszkoreit; et al. (Nucleic Acids Res., 2019)

SPLICE-q: a Python tool for genome-wide quantification of splicing efficiency. - Verônica R. de Melo Costa; Julianus Pfeuffer; Annita Louloupi; Ulf A. V. Ørom; Rosario M. Piro (BMC Bioinform., 2021)

Generation of ENSEMBL-based proteogenomics databases boosts the identification of non-canonical peptides. - Husen M. Umer; Enrique Audain; Yafeng Zhu; Julianus Pfeuffer; Timo Sachsenberg; Janne Lehtiö; Rui Mamede Branca; Yasset Pérez-Riverol (Bioinform., 2022)

UmetaFlow: an untargeted metabolomics workflow for high-throughput data processing and analysis. - Eleftheria Kontou; Axel Walter; Oliver Alka; Julianus Pfeuffer; Timo Sachsenberg; Omkar S. Mohite; Matin Nuhamunada; Oliver Kohlbacher; Tilmann Weber (J. Cheminformatics, 2023)