Improving pan-genome annotation using whole genome multiple alignment. - Samuel V. Angiuoli; Julie C. Dunning Hotopp; Steven L. Salzberg; Hervé Tettelin (BMC Bioinform., 2011)

Using Sybil for interactive comparative genomics of microbes on the web. - David R. Riley 002; Samuel V. Angiuoli; Jonathan Crabtree; Julie C. Dunning Hotopp; Hervé Tettelin (Bioinform., 2012)

Bacteria-Human Somatic Cell Lateral Gene Transfer Is Enriched in Cancer Samples. - David R. Riley 002; Karsten B. Sieber; Kelly M. Robinson; James Robert White; Ashwinkumar Ganesan; Syrus Nourbakhsh; Julie C. Dunning Hotopp (PLoS Comput. Biol., 2013)

Modeling the integration of bacterial rRNA fragments into the human cancer genome. - Karsten B. Sieber; Pawel Gajer; Julie C. Dunning Hotopp (BMC Bioinform., 2016)