aTRAM - automated target restricted assembly method: a fast method for assembling loci across divergent taxa from next-generation sequencing data. - Julie M. Allen; Daisie I. Huang; Quentin C. Cronk; Kevin P. Johnson (BMC Bioinform., 2015)

Spatiotemporal Modeling of Zoonotic Arbovirus Transmission in Northeastern Florida Using Sentinel Chicken Surveillance and Earth Observation Data. - Lindsay P. Campbell; Robert P. Guralnick; Bryan V. Giordano; Mohamed F. Sallam; Amely M. Bauer; Yasmin Tavares; Julie M. Allen; Caroline Efstathion; Suzanne Bartlett; Randy Wishard; Rui-De Xue; Benjamin Allen; et al. (Remote. Sens., 2022)

Efficient pollen grain classification using pre-trained Convolutional Neural Networks: a comprehensive study. - Masoud A. Rostami; Behnaz Balmaki; Lee A. Dyer; Julie M. Allen; Mohamed F. Sallam; Fabrizio Frontalini (J. Big Data, 2023)

Deep learning for accurate classification of conifer pollen grains: enhancing species identification in palynology. - Masoud A. Rostami; Lemaur Kydd; Behnaz Balmaki; Lee A. Dyer; Julie M. Allen (Frontiers Big Data, 2025)