Footprinting, circular dichroism and UV melting studies on neomycin B binding to the packaging region of human immunodeficiency virus type-1 RNA. - Mark P. McPike; Julie M. Sullivan; Jerry Goodisman; James C. Dabrowiak (Nucleic Acids Res., 2002)

YeastMine - an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit. - Rama Balakrishnan; Julie Park; Kalpana Karra; Benjamin C. Hitz; Gail Binkley; Eurie L. Hong; Julie M. Sullivan; Gos Micklem; J. Michael Cherry (Database J. Biol. Databases Curation, 2012)

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data. - Richard N. Smith; Jelena Aleksic; Daniela Butano; Adrian Carr; Sergio Contrino; Fengyuan Hu; Mike Lyne; Rachel Lyne; Alex Kalderimis; Kim Rutherford; Radek Stepan; Julie M. Sullivan; et al. (Bioinform., 2012)

modMine: flexible access to modENCODE data. - Sergio Contrino; Richard N. Smith; Daniela Butano; Adrian Carr; Fengyuan Hu; Rachel Lyne; Kim Rutherford; Alex Kalderimis; Julie M. Sullivan; Seth Carbon; Ellen T. Kephart; Paul Lloyd; et al. (Nucleic Acids Res., 2012)

BioJS InterMine List Analysis: A BioJS component for displaying graphical or statistical analysis of collections of items from InterMine endpoints. - Alex Kalderimis; Radek Stepan; Julie M. Sullivan; Rachel Lyne; Michael Lyne; Gos Micklem (F1000Research, 2014)

BioJS InterMineTable Component: A BioJS component for displaying data from InterMine compatible webservice endpoints. - Alex Kalderimis; Radek Stepan; Julie M. Sullivan; Rachel Lyne; Michael Lyne; Gos Micklem (F1000Research, 2014)

BioJS DAGViewer: A reusable JavaScript component for displaying directed graphs. - Alex Kalderimis; Radek Stepan; Julie M. Sullivan; Rachel Lyne; Michael Lyne; Gos Micklem (F1000Research, 2014)

InterMine: extensive web services for modern biology. - Alex Kalderimis; Rachel Lyne; Daniela Butano; Sergio Contrino; Mike Lyne; Joshua Heimbach; Fengyuan Hu; Richard N. Smith; Radek Stepan; Julie M. Sullivan; Gos Micklem (Nucleic Acids Res., 2014)

toxoMine: an integrated omics data warehouse for Toxoplasma gondii systems biology research. - David B. Rhee; Matthew McKnight Croken; Kevin R. Shieh; Julie M. Sullivan; Gos Micklem; Kami Kim; Aaron Golden (Database J. Biol. Databases Curation, 2015)

Araport: the Arabidopsis Information Portal. - Vivek Krishnakumar; Matthew R. Hanlon; Sergio Contrino; Erik S. Ferlanti; Svetlana Karamycheva; Maria Kim; Benjamin D. Rosen; Chia-Yi Cheng; Walter Moreira; Stephen A. Mock; Joseph Stubbs; Julie M. Sullivan; et al. (Nucleic Acids Res., 2015)

Understanding the Systems Biology of Pathogen Virulence Using Semantic Methodologies. - David Rhee; Kevin R. Shieh; Julie M. Sullivan; Gos Micklem; Kami Kim; Aaron Golden (ICSC, 2016)

Semantic Research Platform for Model Organisms. - Maxime Déraspe; Kalpana Karra; Gail Binkley; Julie M. Sullivan; Gos Micklem; Jacques Corbeil; J. Michael Cherry; Michel Dumontier (BMDID@ISWC, 2016)

Making Linked Data SPARQL with the InterMine Biological Data Warehouse. - Maxime Déraspe; Gail Binkley; Daniela Butano; Matthew Chadwick; J. Michael Cherry; Justin Clark-Casey; Sergio Contrino; Jacques Corbeil; Joshua Heimbach; Kalpana Karra; Rachel Lyne; Julie M. Sullivan; et al. (SWAT4LS, 2016)

Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions. - M. Sivade Dumousseau; Diego Alonso-López; Mais G. Ammari; Glyn Bradley; Nancy H. Campbell; Arnaud Céol; Gianni Cesareni; Colin W. Combe; Javier De Las Rivas; Noemi del-Toro; Joshua Heimbach; Henning Hermjakob; et al. (BMC Bioinform., 2018)

JAMI: a Java library for molecular interactions and data interoperability. - M. Sivade Dumousseau; Maximilian Koch; Anjali Shrivastava; Diego Alonso-López; Javier De Las Rivas; Noemi del-Toro; Colin W. Combe; Birgit H. M. Meldal; Joshua Heimbach; Juri Rappsilber; Julie M. Sullivan; Yo Yehudi; et al. (BMC Bioinform., 2018)

The InterMine Android app: Cross-organism genomic data in your pocket. - Daria Komkova; Rachel Lyne; Julie M. Sullivan; Yo Yehudi; Gos Micklem (F1000Research, 2018)

Implementing FAIR Principles in InterMine. - Daniela Butano; Justin Clark-Casey; Sergio Contrino; Joshua Heimbach; Rachel Lyne; Kevin Herald Reierskog; Julie M. Sullivan; Yo Yehudi; Gos Micklem (SWAT4HCLS, 2019)

InterMineR: an R package for InterMine databases. - Konstantinos A Kyritsis; Bing Wang; Julie M. Sullivan; Rachel Lyne; Gos Micklem (Bioinform., 2019)

HumanMine: advanced data searching, analysis and cross-species comparison. - Rachel Lyne; Adrián Bazaga; Daniela Butano; Sergio Contrino; Joshua Heimbach; Fengyuan Hu; Alex Kalderimis; Mike Lyne; Kevin Herald Reierskog; Radek Stepan; Julie M. Sullivan; Archie Wise; et al. (Database J. Biol. Databases Curation, 2022)