dipwmsearch: a Python package for searching di-PWM motifs. - Marie Mille; Julie Ripoll; Bastien Cazaux; Eric Rivals (Bioinform., 2023)

Physical modeling of ribosomes along messenger RNA: Estimating kinetic parameters from ribosome profiling experiments using a ballistic model. - Carole Chevalier; Jérôme Dorignac; Yahaya Ibrahim; Armelle Choquet; Alexandre David; Julie Ripoll; Eric Rivals; Frédéric Geniet; Nils-Ole Walliser; John Palmeri; Andrea Parmeggiani; Jean-Charles Walter (PLoS Comput. Biol., 2023)