Novel Tree Edit Operations for RNA Secondary Structure Comparison. - Julien Allali; Marie-France Sagot (WABI, 2004)

Comparaison de structures secondaires d'ARN. (RNA secondary structures comparison). - Julien Allali (2004)

A Multiple Graph Layers Model with Application to RNA Secondary Structures Comparison. - Julien Allali; Marie-France Sagot (SPIRE, 2005)

A New Distance for High Level RNA Secondary Structure Comparison. - Julien Allali; Marie-France Sagot (IEEE ACM Trans. Comput. Biol. Bioinform., 2005)

The gapped-factor tree. - Pierre Peterlongo; Julien Allali; Marie-France Sagot (Stringology, 2006)

Adaption of String Matching Algorithms for Identification of Near-Duplicate Music Documents. - Matthias Robine; Pierre Hanna; Pascal Ferraro; Julien Allali (PAN, 2007)

Local Transpositions in Alignment of Polyphonic Musical Sequences. - Julien Allali; Pascal Ferraro; Pierre Hanna; Costas S. Iliopoulos (SPIRE, 2007)

Recherche de documents musicaux par similarité mélodique. - Pierre Hanna; Pascal Ferraro; Matthias Robine; Julien Allali (Document Numérique, 2008)

Indexing Gapped-Factors Using a Tree. - Pierre Peterlongo; Julien Allali; Marie-France Sagot (Int. J. Found. Comput. Sci., 2008)

A multiple layer model to compare RNA secondary structures. - Julien Allali; Marie-France Sagot (Softw. Pract. Exp., 2008)

Polyphonic Alignment Algorithms for Symbolic Music Retrieval. - Julien Allali; Pascal Ferraro; Pierre Hanna; Matthias Robine (CMMR/ICAD, 2009)

Validation and Decomposition of Partially Occluded Images with Holes. - Julien Allali; Pavlos Antoniou; Costas S. Iliopoulos; Pascal Ferraro; Manal Mohamed 001 (Stringology, 2009)

Toward a General Framework for Polyphonic Comparison. - Julien Allali; Pascal Ferraro; Pierre Hanna; Costas S. Iliopoulos; Matthias Robine (Fundam. Informaticae, 2009)

Combinatorial Detection of Arrhythmia. - Julien Allali; Pascal Ferraro; Costas S. Iliopoulos; Spiros Michalakopoulos (BIOSIGNALS, 2010)

BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms. - Julien Allali; Cédric Saule; Cédric Chauve; Yves D'Aubenton-Carafa; Alain Denise; Christine Drevet; Pascal Ferraro; Daniel Gautheret; Claire Herrbach; Fabrice Leclerc; Antoine de Monte; Aïda Ouangraoua; et al. (Adv. Bioinformatics, 2012)

Efficient chaining of seeds in ordered trees. - Julien Allali; Cédric Chauve; Pascal Ferraro; Anne-Laure Gaillard (J. Discrete Algorithms, 2012)

Chaining Fragments in Sequences: to Sweep or Not (Extended Abstract). - Julien Allali; Cédric Chauve; Laetitia Bourgeade (SPIRE, 2015)

Chaining fragments in sequences: to sweep or not. - Julien Allali; Laetitia Bourgeade; Cédric Chauve (CoRR, 2015)

Chaining Sequence/Structure Seeds for Computing RNA Similarity. - Laetitia Bourgeade; Cédric Chauve; Julien Allali (J. Comput. Biol., 2015)

Rhoban Football Club: RoboCup Humanoid Kid-Size 2016 Champion Team Paper. - Julien Allali; Louis Deguillaume; Rémi Fabre; Loïc Gondry; Ludovic Hofer; Olivier Ly; Steve N'Guyen; Grégoire Passault; Antoine Pirrone; Quentin Rouxel (RoboCup, 2016)

Rhoban Football Club: RoboCup Humanoid Kid-Size 2017 Champion Team Paper. - Julien Allali; Rémi Fabre; Loïc Gondry; Ludovic Hofer; Olivier Ly; Steve N'Guyen; Grégoire Passault; Antoine Pirrone; Quentin Rouxel (RoboCup, 2017)

Rhoban Football Club: RoboCup Humanoid Kid-Size 2023 Champion Team Paper. - Julien Allali; Adrien Boussicault; Cyprien Brocaire; Céline Dobigeon; Marc Duclusaud; Clément Gaspard; Hugo Gimbert; Loïc Gondry; Olivier Ly; Grégoire Passault; Antoine Pirrone (RoboCup, 2023)