Modelling and estimating the reliability of stochastic dynamical systems with Markovian switching. - Julien Chiquet; Mohamed Eid; Nikolaos Limnios (Reliab. Eng. Syst. Saf., 2008)

SIMoNe: Statistical Inference for MOdular NEtworks. - Julien Chiquet; Alexander Smith 003; Gilles Grasseau; Catherine Matias; Christophe Ambroise (Bioinform., 2009)

Inferring multiple graphical structures. - Julien Chiquet; Yves Grandvalet; Christophe Ambroise (Stat. Comput., 2011)

Fast Detection of Block Boundaries in Block-Wise Constant Matrices. - Vincent Brault; Julien Chiquet; Céline Lévy-Leduc (MLDM, 2016)

Combining a relaxed EM algorithm with Occam's razor for Bayesian variable selection in high-dimensional regression. - Pierre Latouche; Pierre-Alexandre Mattei; Charles Bouveyron; Julien Chiquet (J. Multivar. Anal., 2016)

Structured regularization for conditional Gaussian graphical models. - Julien Chiquet; Tristan Mary-Huard; Stéphane Robin (Stat. Comput., 2017)

Variable selection in multivariate linear models with high-dimensional covariance matrix estimation. - Marie Perrot-Dockès; Céline Lévy-Leduc; Laure Sansonnet; Julien Chiquet (J. Multivar. Anal., 2018)

Variational Inference for sparse network reconstruction from count data. - Julien Chiquet; Stéphane Robin; Mahendra Mariadassou (ICML, 2019)

Fast computation of genome-metagenome interaction effects. - Florent Guinot; Marie Szafranski; Julien Chiquet; Anouk Zancarini; Christine Le Signor; Christophe Mougel; Christophe Ambroise (Algorithms Mol. Biol., 2020)

Fast tree aggregation for consensus hierarchical clustering. - Audrey Hulot; Julien Chiquet; Florence Jaffrézic; Guillem Rigaill (BMC Bioinform., 2020)

Identification of deregulation mechanisms specific to cancer subtypes. - Magali Champion; Julien Chiquet; Pierre Neuvial; Mohamed Elati; François Radvanyi; Etienne Birmelé (J. Bioinform. Comput. Biol., 2021)

A Probabilistic Graph Coupling View of Dimension Reduction. - Hugues Van Assel; Thibault Espinasse; Julien Chiquet; Franck Picard (NeurIPS, 2022)

missSBM: An R Package for Handling Missing Values in the Stochastic Block Model. - Pierre Barbillon; Julien Chiquet; Timothée Tabouy (J. Stat. Softw., 2022)

Adjusting the adjusted Rand Index. - Martina Sundqvist; Julien Chiquet; Guillem Rigaill (Comput. Stat., 2023)

Automated calibration of consensus weighted distance-based clustering approaches using sharp. - Barbara Bodinier; Dragana Vuckovic; Sabrina Rodrigues; Sarah Filippi; Julien Chiquet; Marc Chadeau-Hyam (Bioinform., 2023)

pyPLNmodels: A Python package to analyze multivariate high-dimensional count data. - Bastien Batardiere; Joon Kwon; Julien Chiquet (J. Open Source Softw., 2024)

Stability Selection and Consensus Clustering in R: The R Package sharp. - Barbara Bodinier; Sabrina Rodrigues; Maryam Karimi; Sarah Filippi; Julien Chiquet; Marc Chadeau-Hyam (J. Stat. Softw., 2025)