LOBSTER: an environment to design bioimage analysis workflows for large and complex fluorescence microscopy data. - Sébastien Tosi; Lídia Bardia; Maria Jose Filgueira; Alexandre Calon; Julien Colombelli (Bioinform., 2020)

MosaicExplorerJ: Interactive stitching of terabyte-size tiled datasets from lightsheet microscopy. - Sébastien Tosi; Lídia Bardia; Maria Jose Barallobre; Arrate Muñoz-Barrutia; María Luisa Soto-Montenegro; Julien Colombelli (F1000Research, 2020)

From whole-organ imaging to in-silico blood flow modeling: A new multi-scale network analysis for revisiting tissue functional anatomy. - Pol Kennel; Jules Dichamp; Corinne Barreau; Christophe Guissard; Lise Teyssedre; Jacques Rouquette; Julien Colombelli; Anne Lorsignol; Louis Casteilla; Franck Plouraboué (PLoS Comput. Biol., 2020)

Bioimage analysis workflows: community resources to navigate through a complex ecosystem. - Perrine Paul-Gilloteaux; Sébastien Tosi; Jean-Karim Hériché; Alban Gaignard; Hervé Ménager; Raphaël Marée; Volker Bäcker; Anna H. Klemm; Matús Kalas; Chong Zhang; Kota Miura; Julien Colombelli (F1000Research, 2021)

AutoScanJ: A Suite of ImageJ Scripts for Intelligent Microscopy. - Sébastien Tosi; Anna Lladó; Lídia Bardia; Elena Rebollo; Anna Godo; Petra Stockinger; Julien Colombelli (Frontiers Bioinform., 2021)