Taming Large-Scale Genomic Analyses via Sparsified Genomics. - Mohammed Alser; Julien Eudine; Onur Mutlu (CoRR, 2022)

GateSeeder: Near-memory CPU-FPGA Acceleration of Short and Long Read Mapping. - Julien Eudine; Mohammed Alser; Gagandeep Singh 002; Can Alkan; Onur Mutlu (CoRR, 2023)

MetaStore: High-Performance Metagenomic Analysis via In-Storage Computing. - Nika Mansouri-Ghiasi; Mohammad Sadrosadati; Harun Mustafa; Arvid Gollwitzer; Can Firtina; Julien Eudine; Haiyu Mao; Joël Lindegger; Meryem Banu Cavlak; Mohammed Alser; Jisung Park 001; Onur Mutlu (CoRR, 2023)

MegIS: High-Performance, Energy-Efficient, and Low-Cost Metagenomic Analysis with In-Storage Processing. - Nika Mansouri-Ghiasi; Mohammad Sadrosadati; Harun Mustafa; Arvid Gollwitzer; Can Firtina; Julien Eudine; Haiyu Mao; Joël Lindegger; Meryem Banu Cavlak; Mohammed Alser; Jisung Park 001; Onur Mutlu (ISCA, 2024)