Intra-operative 3D ultrasound augmentation. - Stephen R. Aylward; Julien Jomier; Jean-Philippe Guyon; Susan Weeks (ISBI, 2002)

Vascular Atlas Formation Using a Vessel-to-Image Affine Registration Method. - Dini Chillet; Julien Jomier; Derek Cool; Stephen R. Aylward (MICCAI (1), 2003)

Quantification of Retinopathy of Prematurity via Vessel Segmentation. - Julien Jomier; David K. Wallace; Stephen R. Aylward (MICCAI (2), 2003)

Registration and Analysis of Vascular Images. - Stephen R. Aylward; Julien Jomier; Susan Weeks; Elizabeth Bullitt (Int. J. Comput. Vis., 2003)

Vascular image registration for intra-operative 3D ultrasound annotation. - Julien Jomier; Sue Weeks; Stephen R. Aylward (CARS, 2004)

Automatic Quantification of Pupil Dilation Under Stress. - Julien Jomier; Erwann Rault; Stephen R. Aylward (ISBI, 2004)

Rigid and Deformable Vasculature-to-Image Registration: A Hierarchical Approach. - Julien Jomier; Stephen R. Aylward (MICCAI (1), 2004)

Combining a Visual Programming and Rapid Prototyping Platform with ITK. - Jan Rexilius; Julien Jomier; Wolf Spindler; Florian Link; Matthias König 001; Heinz-Otto Peitgen (Bildverarbeitung für die Medizin, 2005)

Spatial Graphs for Intra-cranial Vascular Network Characterization, Generation, and Discrimination. - Stephen R. Aylward; Julien Jomier; Christelle Vivert; Vincent LeDigarcher; Elizabeth Bullitt (MICCAI, 2005)

Comparison of Vessel Segmentations Using STAPLE. - Julien Jomier; Vincent LeDigarcher; Stephen R. Aylward (MICCAI, 2005)

Automatic Vascular Tree Formation Using the Mahalanobis Distance. - Julien Jomier; Vincent LeDigarcher; Stephen R. Aylward (MICCAI (2), 2005)

3D/2D Model-to-Image Registration Applied to TIPS Surgery. - Julien Jomier; Elizabeth Bullitt; Mark H. Van Horn; Chetna Pathak; Stephen R. Aylward (MICCAI (2), 2006)

IGSTK: framework and example application using an open source toolkit for image-guided surgery applications. - Peng Cheng; Hui Zhang; Hee-su Kim; Kevin Gary; M. Brian Blake; David Gobbi; Stephen R. Aylward; Julien Jomier; Andinet Enquobahrie; Rick Avila; Luis Ibáñez; Kevin Cleary (Image-Guided Procedures, 2006)

Embedding VTK and ITK into a visual programming and rapid prototyping platform. - Matthias König 001; Wolf Spindler; Jan Rexilius; Julien Jomier; Florian Link; Heinz-Otto Peitgen (Image-Guided Procedures, 2006)

An open-source framework for testing tracking devices using Lego Mindstorms. - Julien Jomier; Luis Ibáñez; Andinet Enquobahrie; Danielle F. Pace; Kevin Cleary (Image-Guided Procedures, 2009)

Evaluation of atlas based mouse brain segmentation. - Joohwi Lee; Julien Jomier; Stephen R. Aylward; Mike Tyszka; Sheryl Moy; Jean Lauder; Martin Styner (Image Processing, 2009)

Remote visualization of large datasets with MIDAS and ParaViewWeb. - Julien Jomier; Sébastien Jourdain; Utkarsh Ayachit; Charles Marion (Web3D, 2011)

Real-time collaborative scientific WebGL visualization with WebSocket. - Charles Marion; Julien Jomier (Web3D, 2012)

A hybrid visualization system for molecular models. - Charles Marion; Joachim Pouderoux; Julien Jomier; Sébastien Jourdain; Marcus D. Hanwell; Utkarsh Ayachit (Web3D, 2013)

Bender: An Open Source Software for Efficient Model Posing and Morphing. - Julien Finet; Ricardo Ortiz; Johan Andruejol; Andinet Enquobahrie; Julien Jomier; Jason Payne; Stephen R. Aylward (ISBMS, 2014)

ITK: enabling reproducible research and open science. - Matthew McCormick 001; Xiaoxiao Liu; Luis Ibáñez; Julien Jomier; Charles Marion (Frontiers Neuroinformatics, 2014)

Bringing 3D visualization into the online research article. - IJsbrand Jan Aalbersberg; Pilar Cos Alvarez; Julien Jomier; Charles Marion; Elena V. Zudilova-Seinstra (Inf. Serv. Use, 2014)

In-Situ Visualization in Computational Fluid Dynamics Using Open-Source tools: Integration of Catalyst into Code_Saturne. - Alejandro Ribés; Benjamin Lorendeau; Julien Jomier; Yvan Fournier (Topological and Statistical Methods for Complex Data, Tackling Large-Scale, High-Dimensional, and Multivariate Data Spaces, 2015)

Contour forests: Fast multi-threaded augmented contour trees. - Charles Gueunet; Pierre Fortin 001; Julien Jomier (LDAV, 2016)

From Real MRA to Virtual MRA: Towards an Open-Source Framework. - Nicolas Passat; Stéphanie Salmon; Jean-Paul Armspach; Benoît Naegel; Christophe Prud'homme; Hugues Talbot; Alexandre Fortin; Simon Garnotel; Odyssée Merveille; Olivia Miraucourt; Ranine Tarabay; Vincent Chabannes; et al. (MICCAI (3), 2016)

Task-based augmented merge trees with Fibonacci heaps. - Charles Gueunet; Pierre Fortin 001; Julien Jomier; Julien Tierny (LDAV, 2017)

Open science - towards reproducible research. - Julien Jomier (Inf. Serv. Use, 2017)

Task-based Augmented Reeb Graphs with Dynamic ST-Trees. - Charles Gueunet; Pierre Fortin 001; Julien Jomier; Julien Tierny (EGPGV@EuroVis, 2019)

Task-Based Augmented Contour Trees with Fibonacci Heaps. - Charles Gueunet; Pierre Fortin 001; Julien Jomier; Julien Tierny (IEEE Trans. Parallel Distributed Syst., 2019)

Cine-MRI Simulation to Evaluate Tumor Tracking. - José D. Tascón-Vidarte; Isak Wahlstedt; Julien Jomier; Kenny Erleben; Ivan R. Vogelius; Sune Darkner (SASHIMI@MICCAI, 2021)