A Pareto-optimal compositional energy-based model for sampling and optimization of protein sequences. - Natasa Tagasovska; Nathan C. Frey; Andreas Loukas; Isidro Hötzel; Julien Lafrance-Vanasse; Ryan Lewis Kelly; Yan Wu 027; Arvind Rajpal; Richard Bonneau; Kyunghyun Cho; Stephen Ra; Vladimir Gligorijevic (CoRR, 2022)

Protein Design with Guided Discrete Diffusion. - Nate Gruver; Samuel Stanton; Nathan C. Frey; Tim G. J. Rudner; Isidro Hötzel; Julien Lafrance-Vanasse; Arvind Rajpal; Kyunghyun Cho; Andrew Gordon Wilson (NeurIPS, 2023)

AbDiffuser: full-atom generation of in-vitro functioning antibodies. - Karolis Martinkus; Jan Ludwiczak; Wei-Ching Liang; Julien Lafrance-Vanasse; Isidro Hötzel; Arvind Rajpal; Yan Wu 027; Kyunghyun Cho; Richard Bonneau; Vladimir Gligorijevic; Andreas Loukas (NeurIPS, 2023)

Protein Discovery with Discrete Walk-Jump Sampling. - Nathan C. Frey; Daniel Berenberg; Karina Zadorozhny; Joseph Kleinhenz; Julien Lafrance-Vanasse; Isidro Hötzel; Yan Wu 027; Stephen Ra; Richard Bonneau; Kyunghyun Cho; Andreas Loukas; Vladimir Gligorijevic; et al. (ICLR, 2024)