On Inferring Reactions from Data Time Series by a Statistical Learning Greedy Heuristics. - Julien Martinelli; Jeremy Grignard; Sylvain Soliman; François Fages (CMSB, 2019)

Model learning to identify systemic regulators of the peripheral circadian clock. - Julien Martinelli; Sandrine Dulong; Xiao-Mei Li; Michèle Teboul; Sylvain Soliman; Francis Lévi; François Fages; Annabelle Ballesta (Bioinform., 2021)

On learning mechanistic models from time series data with applications to personalised chronotherapies. (Sur l'apprentissage automatique de modèles mécanistes à partir de données temporelles avec application aux chronothérapies personnalisées). - Julien Martinelli (2022)

Multi-Fidelity Bayesian Optimization with Unreliable Information Sources. - Petrus Mikkola; Julien Martinelli; Louis Filstroff; Samuel Kaski (AISTATS, 2023)

Cost-aware learning of relevant contextual variables within Bayesian optimization. - Julien Martinelli; Ayush Bharti; S. T. John; Armi Tiihonen; Sabina Sloman; Louis Filstroff; Samuel Kaski (CoRR, 2023)

Learning relevant contextual variables within Bayesian optimization. - Julien Martinelli; Ayush Bharti; Armi Tiihonen; S. T. John; Louis Filstroff; Sabina J. Sloman; Patrick Rinke; Samuel Kaski (UAI, 2024)

Bayesian Active Learning in the Presence of Nuisance Parameters. - Sabina J. Sloman; Ayush Bharti; Julien Martinelli; Samuel Kaski (UAI, 2024)

Heteroscedastic Preferential Bayesian Optimization with Informative Noise Distributions. - Marshal Arijona Sinaga; Julien Martinelli; Vikas Garg 001; Samuel Kaski (CoRR, 2024)

Human-in-the-loop active learning for goal-oriented molecule generation. - Yasmine Nahal; Janosch Menke; Julien Martinelli; Markus Heinonen; Mikhail Kabeshov; Jon Paul Janet; Eva Nittinger; Ola Engkvist; Samuel Kaski (J. Cheminformatics, 2024)

PABBO: Preferential Amortized Black-Box Optimization. - Xinyu Zhang; Daolang Huang; Samuel Kaski; Julien Martinelli (ICLR, 2025)

Proxy-informed Bayesian transfer learning with unknown sources. - Sabina J. Sloman; Julien Martinelli; Samuel Kaski (UAI, 2025)

Challenges in interpretability of additive models. - Xinyu Zhang; Julien Martinelli; ST John (CoRR, 2025)

Robust and Computation-Aware Gaussian Processes. - Marshal Arijona Sinaga; Julien Martinelli; Samuel Kaski (CoRR, 2025)