SABBAC: online Structural Alphabet-based protein BackBone reconstruction from Alpha-Carbon trace. - Julien Maupetit; R. Gautier; Pierre Tufféry (Nucleic Acids Res., 2006)

A Hidden Markov Model applied to the protein 3D structure analysis. - Leslie Regad; Frédéric Guyon; Julien Maupetit; Pierre Tufféry; Anne-Claude Camproux (Comput. Stat. Data Anal., 2008)

Mobyle: a new full web bioinformatics framework. - Bertrand Néron; Hervé Ménager; Corinne Maufrais; Nicolas Joly; Julien Maupetit; Sébastien Letort; Sébastien Carrère; Pierre Tufféry; Catherine Letondal (Bioinform., 2009)

PEP-FOLD: an online resource for de novo peptide structure prediction. - Julien Maupetit; Philippe Derreumaux; Pierre Tufféry (Nucleic Acids Res., 2009)

Bioinformatics Applications Discovery and Composition with the Mobyle Suite and MobyleNet. - Hervé Ménager; Vivek Gopalan; Bertrand Néron; Sandrine Larroudé; Julien Maupetit; Adrien Saladin; Pierre Tufféry; Yentram Huyen; Bernard Caudron (RED, 2010)

Semantic Map for Structural Bioinformatics: Enhanced Service Discovery Based on High Level Concept Ontology. - Edouard Strauser; Mikaël Naveau; Hervé Ménager; Julien Maupetit; Zoé Lacroix; Pierre Tufféry (RED, 2010)

A fast method for large-scale De Novo peptide and miniprotein structure prediction. - Julien Maupetit; Philippe Derreumaux; Pierre Tufféry (J. Comput. Chem., 2010)

fpocket: online tools for protein ensemble pocket detection and tracking. - Peter Schmidtke; Vincent Le Guilloux; Julien Maupetit; Pierre Tufféry (Nucleic Acids Res., 2010)

The FAF-Drugs2 server: a multistep engine to prepare electronic chemical compound collections. - David Lagorce; Julien Maupetit; Jonathan B. Baell; Olivier Sperandio; Pierre Tufféry; Maria A. Miteva; Hervé Galons; Bruno O. Villoutreix (Bioinform., 2011)

SA-Mot: a web server for the identification of motifs of interest extracted from protein loops. - Leslie Regad; Adrien Saladin; Julien Maupetit; Colette Geneix; Anne-Claude Camproux (Nucleic Acids Res., 2011)

PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides. - Pierre Thévenet; Yimin Shen; Julien Maupetit; Frédéric Guyon; Philippe Derreumaux; Pierre Tufféry (Nucleic Acids Res., 2012)