Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis. - Cecilia Wieder; Clément Frainay; Nathalie Poupin; Pablo Rodríguez-Mier; Florence Vinson; Juliette Cooke; Rachel P. J. Lai; Jacob G. Bundy; Fabien Jourdan; Timothy M. D. Ebbels (PLoS Comput. Biol., 2021)

In silico prediction of metabolic profiles for improved biomarker discovery and metabolic phenotyping. (Prédiction in silico de profils métaboliques pour améliorer la découverte des biomarqueurs et le phénotypage métabolique). - Juliette Cooke (2023)

PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integration. - Cecilia Wieder; Juliette Cooke; Clément Frainay; Nathalie Poupin; Russell Bowler; Fabien Jourdan; Katerina J. Kechris; Rachel P. J. Lai; Timothy M. D. Ebbels (PLoS Comput. Biol., 2024)

Genome scale metabolic network modelling for metabolic profile predictions. - Juliette Cooke; Maxime Delmas; Cecilia Wieder; Pablo Rodríguez-Mier; Clément Frainay; Florence Vinson; Timothy M. D. Ebbels; Nathalie Poupin; Fabien Jourdan (PLoS Comput. Biol., 2024)