How Changing High Performance Computing Technology Changes the Way in Whigh We Do Computational Chemistry. - Julio C. Facelli; Jeff Nichols (SC, 1992)

Improving Cluster Utilization through Set Based Allocation Policies. - David B. Jackson; Brian D. Haymore; Julio C. Facelli; Quinn Snell (ICPP Workshops, 2001)

A general framework to understand parallel performance in heterogeneous clusters: analysis of a new adaptive parallel genetic algorithm. - Victor E. Bazterra; Martin Cuma; Marta B. Ferraro; Julio C. Facelli (J. Parallel Distributed Comput., 2005)

Poster reception - Digital Sherpa. - Ronald C. Price; Victor E. Bazterra; Wayne B. Bradford; Julio C. Facelli (SC, 2006)

Computational Science and Engineering Online (CSE-Online): A Cyber-Infrastructure for Scientific Computing. - Thanh N. Truong; Manohar Nayak; Hung H. Huynh; Tom Cook; Priya Mahajan; Le-Thuy T. Tran; Jannu Bharath; Shrish Jain; Ha B. Pham; Chaiwoot Boonyasiriwat; Nhat Nguyen; Evan Andersen; et al. (J. Chem. Inf. Model., 2006)

Digital Sherpa: a set of high level tools to manage scientific applications in a computational grid. - Ronald C. Price; Wayne B. Bradford; Victor E. Bazterra; Julio C. Facelli (Mardi Gras Conference, 2008)

A parallel genetic algorithm to discover patterns in genetic markers that indicate predisposition to multifactorial disease. - Tobias Rausch; Alun Thomas; Nicola J. Camp; Lisa A. Cannon-Albright; Julio C. Facelli (Comput. Biol. Medicine, 2008)

Parallel Genetic Algorithms for Crystal Structure Prediction: Successes and Failures in Predicting Bicalutamide Polymorphs. - Marta B. Ferraro; Anita M. Orendt; Julio C. Facelli (ICIC (1), 2009)

Crystal structure prediction of flexible molecules using parallel genetic algorithms with a standard force field. - Seonah Kim; Anita M. Orendt; Marta B. Ferraro; Julio C. Facelli (J. Comput. Chem., 2009)

A case for using grid architecture for state public health informatics: the Utah perspective. - Catherine J. Staes; Wu Xu; Samuel D. LeFevre; Ronald C. Price; Scott P. Narus; Adi V. Gundlapalli; Robert T. Rolfs; Barry Nangle; Matthew H. Samore; Julio C. Facelli (BMC Medical Informatics Decis. Mak., 2009)

Predicting the start week of respiratory syncytial virus outbreaks using real time weather variables. - Nephi A. Walton; Mollie R. Poynton; Per H. Gesteland; Christopher G. Maloney; Catherine J. Staes; Julio C. Facelli (BMC Medical Informatics Decis. Mak., 2010)

Characterization of uncertainty in the classification of multivariate assays: application to PAM50 centroid-based genomic predictors for breast cancer treatment plans. - Mark T. W. Ebbert; Roy R. L. Bastien; Kenneth M. Boucher; Miguel Martín; Eva Carrasco; Rosalía Caballero; Inge J. Stijleman; Philip S. Bernard; Julio C. Facelli (J. Clin. Bioinform., 2011)

Federated Queries for Comparative Effectiveness Research: Performance Analysis. - Ronald C. Price; Derick Huth; Jody Smith; Steve Harper; Wilson Pace; Gerald Pulver; Michael G. Kahn; Lisa M. Schilling; Julio C. Facelli (HealthGrid, 2012)

Nanoinformatics: developing new computing applications for nanomedicine. - Victor Maojo; Martin Fritts; Fernando Martín-Sánchez; Diana de la Iglesia; Raul E. Cachau; Miguel García-Remesal; José Crespo; Joyce A. Mitchell; Alberto Anguita; Nathan A. Baker; José María Barreiro; Sonia E. Benitez; et al. (Computing, 2012)

Utility of gene-specific algorithms for predicting pathogenicity of uncertain gene variants. - David K. Crockett; Elaine Lyon; Marc S. Williams; Scott P. Narus; Julio C. Facelli; Joyce A. Mitchell (J. Am. Medical Informatics Assoc., 2012)

Identification of pneumonia and influenza deaths using the death certificate pipeline. - Kailah Davis; Catherine J. Staes; Jeffrey Duncan; Sean Igo; Julio C. Facelli (BMC Medical Informatics Decis. Mak., 2012)

An agenda for ultra-large-scale system research for global health informatics. - Julio C. Facelli (SIGHIT Rec., 2012)

Going FURTHeR with Three Federated Query Types. - Richard L. Bradshaw; N. Dustin Schultz; Julio C. Facelli; Randy Madsen; Ramkiran Gouripeddi; Ryan Butcher; Bernie LaSalle (AMIA, 2013)

Using Primitive Role Relationships in SNOMED to Enhance Concept Searching by Limiting Semantic Variability in FURTHeR. - Ryan Butcher; Ramkiran Gouripeddi; Randy Madsen; Julio C. Facelli (AMIA, 2013)

FURTHeR: An Infrastructure for Clinical, Translational and Comparative Effectiveness Research. - Ramkiran Gouripeddi; Julio C. Facelli; Richard L. Bradshaw; Dustin Schultz; Bernie LaSalle; Phillip B. Warner; Ryan Butcher; Randy Madsen; Peter Mo (AMIA, 2013)

Knowledge Driven Inclusion and Exclusion Criteria Refinement within the FURTHeR Framework. - Randy Madsen; Richard L. Bradshaw; N. Dustin Schultz; Ryan Butcher; Ramkiran Gouripeddi; Joyce A. Mitchell; Julio C. Facelli (AMIA, 2013)

Federating caTissue with FURTHeR. - Peter Mo; Randy Madsen; Richard L. Bradshaw; N. Dustin Schultz; Ryan Butcher; Bernie LaSalle; Ramkiran Gouripeddi; Julio C. Facelli (AMIA, 2013)

Creating a Secure, Easily Accessible Environment for PHI Data Exports within FURTHeR utilizing REDCap. - Dustin Schultz; Bernie LaSalle; Shan He 004; Ramkiran Gouripeddi; Ryan Butcher; Julio C. Facelli (AMIA, 2013)

On the Fly Linkage of Records Containing Protected Health Information (PHI) Within the FURTHeR Framework. - Phillip B. Warner; Peter Mo; N. Dustin Schultz; Ramkiran Gouripeddi; Scott P. Narus; Julio C. Facelli (AMIA, 2013)

Implementing public health analytical services: Grid enabling of MetaMap. - Kailah Davis; Ronald C. Price; Julio C. Facelli (CBMS, 2013)

A Service Oriented Framework to Assess the Quality of Electronic Health Data for Clinical Research. - Naresh Sundar Rajan; Ramkiran Gouripeddi; Julio C. Facelli (ICHI, 2013)

International Collaborations in Health Informatics Education: Globalizing Health and Biomedical Informatics Curricula. - Monique W. M. Jaspers; George Demiris; Julio C. Facelli; Lael C. Gatewood; Alexander Hörbst; J. Li; Daniel Pfeifer; Thomas Wetter (MedInfo, 2013)

iBIOMES: Managing and Sharing Biomolecular Simulation Data in a Distributed Environment. - Julien C. Thibault; Julio C. Facelli; Thomas E. Cheatham III (J. Chem. Inf. Model., 2013)

Federating Air Quality Data with Clinical Data. - Ramkiran Gouripeddi; Naresh Sundar Rajan; Randy Madsen; Phillip B. Warner; Julio C. Facelli (AMIA, 2014)

VIRGO: Virtual Identity Resolution on the Go. - Phillip B. Warner; Peter Mo; N. Dustin Schultz; Ramkiran Gouripeddi; Jeffrey Duncan; Julio C. Facelli (ICHI, 2014)

Structure prediction of polyglutamine disease proteins: comparison of methods. - Jingran Wen; Daniel R. Scoles; Julio C. Facelli (BMC Bioinform., 2014)

Development of a HIPAA-compliant environment for translational research data and analytics. - Wayne B. Bradford; John F. Hurdle; Bernie LaSalle; Julio C. Facelli (J. Am. Medical Informatics Assoc., 2014)

A domain analysis model for eIRB systems: Addressing the weak link in clinical research informatics. - Shan He 004; Scott P. Narus; Julio C. Facelli; Lee Min Lau; Jeffrey R. Botkin; John F. Hurdle (J. Biomed. Informatics, 2014)

Data model, dictionaries, and desiderata for biomolecular simulation data indexing and sharing. - Julien C. Thibault; Daniel R. Roe; Julio C. Facelli; Thomas E. Cheatham III (J. Cheminformatics, 2014)

iBIOMES Lite: Summarizing Biomolecular Simulation Data in Limited Settings. - Julien C. Thibault; Thomas E. Cheatham III; Julio C. Facelli (J. Chem. Inf. Model., 2014)

Assessment of the Heterogeneity of Outcome Measurements for IT Interventions in Health Care. - Tiago K. Colicchio; Julio C. Facelli; Guilherme Del Fiol; Debra L. Scammon; Watson A. Bowes III; Scott P. Narus (AMIA, 2016)

A review of the applications of data mining and machine learning for the prediction of biomedical properties of nanoparticles. - David E. Jones; Hamidreza Ghandehari; Julio C. Facelli (Comput. Methods Programs Biomed., 2016)

Health information technology adoption: Understanding research protocols and outcome measurements for IT interventions in health care. - Tiago K. Colicchio; Julio C. Facelli; Guilherme Del Fiol; Debra L. Scammon; Watson A. Bowes III; Scott P. Narus (J. Biomed. Informatics, 2016)

Extraction of Patient Temporal Patterns and Clusters from Clinical Data. - Samir E. AbdelRahman; Julio C. Facelli; Bruce E. Bray; Rashmee U. Shah; Guilherme Del Fiol (AMIA, 2017)

The Impact of Health IT Adoption: Are We Measuring the Right Outcomes? - Tiago K. Colicchio; Guilherme Del Fiol; Watson A. Bowes III; Julio C. Facelli; Debra L. Scammon; Scott P. Narus (AMIA, 2017)

A Conceptual Representation of Exposome in Translational Research. - Ramkiran Gouripeddi; Nicole Burnett; Mollie R. Cummins; Julio C. Facelli; Katherine A. Sward (AMIA, 2017)

Solving Interoperability in Translational Health. - Anne M. Turner; Julio C. Facelli; Monique W. M. Jaspers; Thomas Wetter; Daniel Pfeifer; Laël Cranmer Gatewood; Terry Adam; Yu-Chuan Li; Ming-Chin Lin; R. Scott Evans; Anna L. Beukenhorst; Hugo Johan Theodoore van Mens; et al. (Appl. Clin. Inform., 2017)

Development and classification of a robust inventory of near real-time outcome measurements for assessing information technology interventions in health care. - Tiago K. Colicchio; Guilherme Del Fiol; Debra L. Scammon; Watson A. Bowes III; Julio C. Facelli; Scott P. Narus (J. Biomed. Informatics, 2017)

Calcium interactions with Cx26 hemmichannel: Spatial association between MD simulations biding sites and variant pathogenicity. - Juan M. R. Albano; Nahuel Mussini; Roxana Toriano; Julio C. Facelli; Marta B. Ferraro; Mónica Pickholz (Comput. Biol. Chem., 2018)

Comprehensive methodology to monitor longitudinal change patterns during EHR implementations: a case study at a large health care delivery network. - Tiago K. Colicchio; Guilherme Del Fiol; Debra L. Scammon; Julio C. Facelli; Watson A. Bowes III; Scott P. Narus (J. Biomed. Informatics, 2018)

Assimilating Pollen into Exposomes for Pediatric Asthma Research. - Ramkiran Gouripeddi; Le-Thuy T. Tran; Tanvi Gangadhar; Randy K. Madsen; Julio C. Facelli; Katherine A. Sward (AMIA, 2019)

An Architecture for Metadata-driven Integration of Heterogeneous Sensor and Health Data for Translational Exposomic Research. - Ramkiran Gouripeddi; Le-Thuy T. Tran; Randy Madsen; Tanvi Gangadhar; Peter Mo; Nicole Burnett; Ryan Butcher; Katherine A. Sward; Julio C. Facelli (BHI, 2019)

Concept Bag: A New Method for Computing Concept Similarity in Biomedical Data. - Richard L. Bradshaw; Ramkiran Gouripeddi; Julio C. Facelli (IWBBIO (2), 2019)

An Architecture to Support Real-World Studies that Investigate the Autonomic Nervous System. - Danielle Groat; Ramkiran Gouripeddi; Randy Madsen; Yu Kuei Lin; Julio C. Facelli (Poly/DMAH@VLDB, 2019)

Towards a content agnostic computable knowledge repository for data quality assessment. - Naresh Sundar Rajan; Ramkiran Gouripeddi; Peter Mo; Randy Madsen; Julio C. Facelli (Comput. Methods Programs Biomed., 2019)

Generation and Classification of Activity Sequences for Spatiotemporal Modeling of Human Populations. - Albert M. Lund; Ramkiran Gouripeddi; Julio C. Facelli (CoRR, 2019)

A Harmonized Framework to Evaluate Impacts of ECHO Pain and Opioid Training on Patients and Clinicians. - Le-Thuy T. Tran; Ramkiran Gouripeddi; Julio C. Facelli (AMIA, 2020)

Characterization of Analytic and Experimental Uncertainty of RNA-seq Co-expression Network Determination: Application to SCA2. - Lance T. Pflieger; Stefan M. Pulst; Julio C. Facelli (ICHI, 2020)

Predicting Optimal Hypertension Treatment Pathways Using Recurrent Neural Networks. - Xiangyang Ye; Qing T. Zeng; Julio C. Facelli; Diana I. Brixner; Mike Conway; Bruce E. Bray (Int. J. Medical Informatics, 2020)

Human activity pattern implications for modeling SARS-CoV-2 transmission. - Yulan Wang; Bernard Li; Ramkiran Gouripeddi; Julio C. Facelli (Comput. Methods Programs Biomed., 2021)

Enabling a learning healthcare system with automated computer protocols that produce replicable and personalized clinician actions. - Alan H. Morris; Brian Stagg; Michael Lanspa; James Orme; Terry P. Clemmer; Lindell K. Weaver; Frank Thomas; Colin K. Grissom; Ellie Hirshberg; Thomas D. East; Carrie Jane Wallace; Michael P. Young; et al. (J. Am. Medical Informatics Assoc., 2021)

Computer clinical decision support that automates personalized clinical care: a challenging but needed healthcare delivery strategy. - Alan H. Morris; Christopher Horvat; Brian Stagg; David W. Grainger; Michael Lanspa; James Orme; Terry P. Clemmer; Lindell K. Weaver; Frank Thomas; Colin K. Grissom; Ellie Hirshberg; Thomas D. East; et al. (J. Am. Medical Informatics Assoc., 2022)

Conformal Prediction in Clinical Medical Sciences. - Janette Vazquez; Julio C. Facelli (J. Heal. Informatics Res., 2022)

Structural Homology of Epitope Binding Mimicry in the Onset of Type 1 Diabetes Mellitus. - Ryan Gardner; Joshua Wilkins; Sejal Mistry; Ramkiran Gouripeddi; Julio C. Facelli (BIBM, 2023)

Resuming HealthCare Informatics Research after CoViD-19: the HealthCare System Perspective. - Carlo Combi; Julio C. Facelli; Peter Haddawy; John H. Holmes; Sabine Koch; Hongfang Liu; Jochen Meyer 001; Mor Peleg; Giuseppe Pozzi; Gregor Stiglic; Pierangelo Veltri; Christopher C. Yang (ICHI, 2023)

Uncertainty in Breast Cancer Risk Prediction: A Conformal Prediction Study of Race Stratification. - Alexander S. Millar; John Arnn; Sam Himes; Julio C. Facelli (MedInfo, 2023)

Environmental exposures in machine learning and data mining approaches to diabetes etiology: A scoping review. - Sejal Mistry; Naomi O. Riches; Ramkiran Gouripeddi; Julio C. Facelli (Artif. Intell. Medicine, 2023)

Sequential data mining of infection patterns as predictors for onset of type 1 diabetes in genetically at-risk individuals. - Sejal Mistry; Ramkiran Gouripeddi; Vandana Raman; Julio C. Facelli (J. Biomed. Informatics, 2023)

The IHI Rochester Report 2022 on Healthcare Informatics Research: Resuming After the CoViD-19. - Carlo Combi; Julio C. Facelli; Peter Haddawy; John H. Holmes; Sabine Koch; Hongfang Liu; Jochen Meyer 001; Mor Peleg; Giuseppe Pozzi; Gregor Stiglic; Pierangelo Veltri; Christopher C. Yang (J. Heal. Informatics Res., 2023)

Recommendations to promote fairness and inclusion in biomedical AI research and clinical use. - Ashley C. Griffin; Karen H. Wang; Tiffany I. Leung; Julio C. Facelli (J. Biomed. Informatics, 2024)

An open science grid implementation of the steady state genetic algorithm for crystal structure prediction. - Kristal N. Varela; Gabriel I. Pagola; Albert M. Lund; Marta B. Ferraro; Anita M. Orendt; Julio C. Facelli (J. Comput. Sci., 2024)

Conceptual framework for prediction models of patient deterioration based on nursing documentation patterns: reproducibility and generalizability with a large number of hospitals across the United States. - Yik-Ki Jacob Wan; Samir E. Abdelrahman; Julio C. Facelli; Karl Madaras-Kelly; Kensaku Kawamoto; Deniz Dishman; S. Trent Rosenbloom; Kenrick Cato; Sarah Collins Rossetti; Guilherme Del Fiol (J. Biomed. Informatics, 2025)