De Novo Sequencing of Nonribosomal Peptides. - Nuno Bandeira; Julio Ng; Dario Meluzzi; Roger G. Linington; Pieter C. Dorrestein; Pavel A. Pevzner (RECOMB, 2008)

Grafta: A 3D environment for biomolecular networks. - Peyman Najmabadi; Hans He Lee; Tony Aung; Aung Thuya; Julio Ng; James J. La Clair; Michael D. Burkart (Int. J. Bioinform. Res. Appl., 2009)

Blocked Pattern Matching Problem and Its Applications in Proteomics. - Julio Ng; Amihood Amir; Pavel A. Pevzner (RECOMB, 2011)