D-MANOVA: fast distance-based multivariate analysis of variance for large-scale microbiome association studies. - Jun Chen 040; Xianyang Zhang (Bioinform., 2021)

dICC: distance-based intraclass correlation coefficient for metagenomic reproducibility studies. - Jun Chen 040; Xianyang Zhang (Bioinform., 2022)

Batch-effect correction with sample remeasurement in highly confounded case-control studies. - Hanxuan Ye; Xianyang Zhang; Chen Wang 001; Ellen L. Goode; Jun Chen 040 (Nat. Comput. Sci., 2023)

A general framework for powerful confounder adjustment in omics association studies. - Asmita Roy; Jun Chen 040; Xianyang Zhang (Bioinform., 2023)

2dGBH: Two-dimensional group Benjamini-Hochberg procedure for false discovery rate control in two-way multiple testing of genomic data. - Lu Yang 017; Pei Wang; Jun Chen 040 (Bioinform., 2024)