Specific identification and quantification of circular RNAs from sequencing data. - Jun Cheng 007; Franziska Metge; Christoph Dieterich (Bioinform., 2016)

Modeling positional effects of regulatory sequences with spline transformations increases prediction accuracy of deep neural networks. - Ziga Avsec; Mohammadamin Barekatain; Jun Cheng 007; Julien Gagneur (Bioinform., 2018)

VEGN: Variant Effect Prediction with Graph Neural Networks. - Jun Cheng 007; Carolin Lawrence; Mathias Niepert (CoRR, 2021)

BERTMHC: improved MHC-peptide class II interaction prediction with transformer and multiple instance learning. - Jun Cheng 007; Kaïdre Bendjama; Karola Rittner; Brandon M. Malone (Bioinform., 2021)