GlycoVault: A Bioinformatics Infrastructure for Glycan Pathway Visualization, Analysis and Modeling. - Shravya Nimmagadda; Amrita Basu; Matthew Eavenson; Jun Han 007; Maciej Janik; Rajesh Narra; Kishore Nimmagadda; Arpan Sharma; Krys J. Kochut; John A. Miller 001; William S. York (ITNG, 2008)

Using Domain Specific Language for modeling and simulation: ScalaTion as a case study. - John A. Miller 001; Jun Han 007; Maria Hybinette (WSC, 2010)

Sopt: ontology for simulation optimization for scientific experiments. - Jun Han 007; John A. Miller 001; Gregory A. Silver (WSC, 2011)

Quantitative glycomics using simulation optimization. - Jun Han 007 (2012)