DNAPred: Accurate Identification of DNA-Binding Sites from Protein Sequence by Ensembled Hyperplane-Distance-Based Support Vector Machines. - Yi-Heng Zhu 001; Jun Hu 010; Xiaoning Song; Dong-Jun Yu (J. Chem. Inf. Model., 2019)

scTPA: a web tool for single-cell transcriptome analysis of pathway activation signatures. - Yan Zhang; Yaru Zhang; Jun Hu 010; Ji Zhang; Fangjie Guo; Meng Zhou 003; Guijun Zhang; Fulong Yu; Jianzhong Su (Bioinform., 2020)

基于接触图残基对距离约束的蛋白质结构预测算法 (Contact Map-based Residue-pair Distances Restrained Protein Structure Prediction Algorithm). - Tengyu Xie; Xiaogen Zhou; Jun Hu 010; Guijun Zhang (计算机科学, 2020)

TargetDBP: Accurate DNA-Binding Protein Prediction Via Sequence-Based Multi-View Feature Learning. - Jun Hu 010; Xiaogen Zhou; Yi-Heng Zhu 001; Dong-Jun Yu; Gui-Jun Zhang (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Two-Stage Distance Feature-based Optimization Algorithm for De novo Protein Structure Prediction. - Gui-Jun Zhang; Xiao-Qi Wang; Lai-Fa Ma; Liu-Jing Wang; Jun Hu 010; Xiao-Gen Zhou (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Accurate multistage prediction of protein crystallization propensity using deep-cascade forest with sequence-based features. - Yi-Heng Zhu 001; Jun Hu 010; Fang Ge; Fuyi Li; Jiangning Song; Yang Zhang 040; Dong-Jun Yu (Briefings Bioinform., 2021)

TargetDBP+: Enhancing the Performance of Identifying DNA-Binding Proteins via Weighted Convolutional Features. - Jun Hu 010; Liang Rao; Yi-Heng Zhu 001; Gui-Jun Zhang; Dong-Jun Yu (J. Chem. Inf. Model., 2021)

Learning to capture dependencies between global features of different convolution layers. - Zhangwei Li; Anshun Hu; Xiaofei Wang; Jun Hu 010; Guijun Zhang (J. Vis. Commun. Image Represent., 2021)

Protein Structure Prediction Using Population-Based Algorithm Guided by Information Entropy. - Gui-Jun Zhang; Tengyu Xie; Xiao-Gen Zhou; Liu-Jing Wang; Jun Hu 010 (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

ATPdock: a template-based method for ATP-specific protein-ligand docking. - Liang Rao; Ning-Xin Jia; Jun Hu 010; Dong-Jun Yu; Gui-Jun Zhang (Bioinform., 2022)

Robust distance metric optimization driven GEPSVM classifier for pattern classification. - He Yan; Liyong Fu; Tian'an Zhang; Jun Hu 010; Qiaolin Ye; Yong Qi; Dong-Jun Yu (Pattern Recognit., 2022)

Protein-DNA Binding Residue Prediction via Bagging Strategy and Sequence-Based Cube-Format Feature. - Jun Hu 010; Yan-Song Bai; Lin-Lin Zheng; Ning-Xin Jia; Dong-Jun Yu; Gui-Jun Zhang (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

I-DNAN6mA: Accurate Identification of DNA N6-Methyladenine Sites Using the Base-Pairing Map and Deep Learning. - Xue-Qiang Fan; Bing Lin; Jun Hu 010; Zhong-Yi Guo 001 (J. Chem. Inf. Model., 2023)

Improving DNA-Binding Protein Prediction Using Three-Part Sequence-Order Feature Extraction and a Deep Neural Network Algorithm. - Jun Hu 010; Wenwu Zeng; Ning-Xin Jia; Muhammad Arif 012; Dong-Jun Yu; Gui-Jun Zhang (J. Chem. Inf. Model., 2023)

Improving DNA 6mA Site Prediction via Integrating Bidirectional Long Short-Term Memory, Convolutional Neural Network, and Self-Attention Mechanism. - Jun Hu 010; Yu-Xuan Tang; Yu Zhou; Zhe Li; Bing Rao; Gui-Jun Zhang (J. Chem. Inf. Model., 2023)

Ense-i6mA: Identification of DNA N6-Methyladenine Sites Using XGB-RFE Feature Selection and Ensemble Machine Learning. - Xueqiang Fan; Bing Lin; Jun Hu 010; Zhongyi Guo 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

E2EATP: Fast and High-Accuracy Protein-ATP Binding Residue Prediction via Protein Language Model Embedding. - Bing Rao; Xuan Yu; Jie Bai; Jun Hu 010 (J. Chem. Inf. Model., 2024)

RLEAAI: improving antibody-antigen interaction prediction using protein language model and sequence order information. - Jun Hu 010; Yu Zhou; Wen-Yi Zhang; Xiao-Gen Zhou (Briefings Bioinform., 2025)