Supervised Kernel Self-Organizing Map. - Dongjun Yu; Jun Hu 011; Xiaoning Song; Yong Qi; Zhenmin Tang (IScIDE, 2012)

Improving protein-ATP binding residues prediction by boosting SVMs with random under-sampling. - Dong-Jun Yu; Jun Hu 011; Zhenmin Tang; Hong-Bin Shen; Jian Yang 003; Jing-Yu Yang 001 (Neurocomputing, 2013)

TargetATPsite: A template-free method for ATP-binding sites prediction with residue evolution image sparse representation and classifier ensemble. - Dong-Jun Yu; Jun Hu 011; Yan Huang; Hong-Bin Shen; Yong Qi; Zhenmin Tang; Jing-Yu Yang 001 (J. Comput. Chem., 2013)

Designing Template-Free Predictor for Targeting Protein-Ligand Binding Sites with Classifier Ensemble and Spatial Clustering. - Dong-Jun Yu; Jun Hu 011; Jing Yang; Hong-Bin Shen; Jinhui Tang 001; Jing-Yu Yang 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Enhancing protein-vitamin binding residues prediction by multiple heterogeneous subspace SVMs ensemble. - Dong-Jun Yu; Jun Hu 011; Hui Yan; Xibei Yang; Jing-Yu Yang 001; Hong-Bin Shen (BMC Bioinform., 2014)

Disulfide Connectivity Prediction Based on Modelled Protein 3D Structural Information and Random Forest Regression. - Dong-Jun Yu; Yang Li 107; Jun Hu 011; Xibei Yang; Jing-Yu Yang 001; Hong-Bin Shen (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

GPCR-drug interactions prediction using random forest with drug-association-matrix-based post-processing procedure. - Jun Hu 011; Yang Li 107; Jing-Yu Yang 001; Hong-Bin Shen; Dong-Jun Yu (Comput. Biol. Chem., 2016)

KNN-based dynamic query-driven sample rescaling strategy for class imbalance learning. - Jun Hu 011; Yang Li 107; Wuxia Yan; Jing-Yu Yang 001; Hong-Bin Shen; Dong-Jun Yu (Neurocomputing, 2016)

Enhancing Protein-ATP and Protein-ADP Binding Sites Prediction Using Supervised Instance-Transfer Learning. - Jun Hu 011; Zi Liu; Dong-Jun Yu (ACPR, 2017)

Predicting Protein-DNA Binding Residues by Weightedly Combining Sequence-Based Features and Boosting Multiple SVMs. - Jun Hu 011; Yang Li 107; Ming Zhang 033; Xibei Yang; Hong-Bin Shen; Dong-Jun Yu (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

LS-align: an atom-level, flexible ligand structural alignment algorithm for high-throughput virtual screening. - Jun Hu 011; Zi Liu; Dong-Jun Yu; Yang Zhang 040 (Bioinform., 2018)

ATPbind: Accurate Protein-ATP Binding Site Prediction by Combining Sequence-Profiling and Structure-Based Comparisons. - Jun Hu 011; Yang Li 107; Yang Zhang 040; Dong-Jun Yu (J. Chem. Inf. Model., 2018)

ResPRE: high-accuracy protein contact prediction by coupling precision matrix with deep residual neural networks. - Yang Li 107; Jun Hu 011; Chengxin Zhang; Dong-Jun Yu; Yang Zhang 040 (Bioinform., 2019)