Protein Threading with Profiles and Constraints. - Tatsuya Akutsu; Morihiro Hayashida; Etsuji Tomita; Jun'ichi Suzuki; Katsuhisa Horimoto (BIBE, 2004)

Clique-based algorithms for protein threading with profiles and constraints. - Dukka Bahadur; Etsuji Tomita; Jun'ichi Suzuki; Katsuhisa Horimoto; Tatsuya Akutsu (APBC, 2005)

Protein Side-chain Packing Problem: a Maximum Edge-weight Clique Algorithmic Approach. - K. C. Dukka Bahadur; Etsuji Tomita; Jun'ichi Suzuki; Tatsuya Akutsu (J. Bioinform. Comput. Biol., 2005)

Dynamic Programming and Clique Based Approaches for Protein Threading with Profiles and Constraints. - Tatsuya Akutsu; Morihiro Hayashida; Dukka Bahadur; Etsuji Tomita; Jun'ichi Suzuki; Katsuhisa Horimoto (IEICE Trans. Fundam. Electron. Commun. Comput. Sci., 2006)

Protein Threading with Profiles and Distance Constraints Using Clique Based Algorithms. - K. C. Dukka Bahadur; Etsuji Tomita; Jun'ichi Suzuki; Katsuhisa Horimoto; Tatsuya Akutsu (J. Bioinform. Comput. Biol., 2006)