Service-Based Access to and Processing of Large Scientific Datasets. - Ümit V. Çatalyürek; Sivaramakrishnan Narayanan; Olcay Sertel; Jun Kong 002; Berkant Barla Cambazoglu; Tony Pan; Ashish Sharma 001; Shannon Hastings; Stephen Langella; Scott Oster; Tahsin M. Kurç; Metin Nafi Gürcan; et al. (High Performance Computing Workshop, 2006)

Computerized Pathological Image Analysis For Neuroblastoma Prognosis. - Metin N. Gurcan; Jun Kong 002; Olcay Sertel; Berkant Barla Cambazoglu; Joel H. Saltz; Ümit V. Çatalyürek (AMIA, 2007)

Efficient processing of pathological images using the grid: computer-aided prognosis of neuroblastoma. - Berkant Barla Cambazoglu; Olcay Sertel; Jun Kong 002; Joel H. Saltz; Metin N. Gurcan; Ümit V. Çatalyürek (CLADE@HPDC, 2007)

Performance vs. accuracy trade-offs for large-scale image analysis applications. - Vijay S. Kumar; Tahsin M. Kurç; Jun Kong 002; Ümit V. Çatalyürek; Metin N. Gurcan; Joel H. Saltz (CLUSTER, 2007)

Computer-Aided Grading of Neuroblastic Differentiation: Multi-Resolution and Multi-Classifier Approach. - Jun Kong 002; Olcay Sertel; Hiroyuki Shimada; Kim L. Boyer; Joel H. Saltz; Metin N. Gurcan (ICIP (5), 2007)

Image Analysis for Automated Assessment of Grade of Neuroblastic Differentiation. - Jun Kong 002; Hiroyuki Shimada; Kim L. Boyer; Joel H. Saltz; Metin N. Gurcan (ISBI, 2007)

Texture classification using nonlinear color quantization: Application to histopathological image analysis. - Olcay Sertel; Jun Kong 002; Gerard Lozanski; Arwa Shanaah; Ümit V. Çatalyürek; Joel H. Saltz; Metin N. Gurcan (ICASSP, 2008)

Pathological image segmentation for neuroblastoma using the GPU. - Antonio Ruiz; Jun Kong 002; Manuel Ujaldon; Kim L. Boyer; Joel H. Saltz; Metin N. Gurcan (ISBI, 2008)

A multi-resolution image analysis system for computer-assisted grading of neuroblastoma differentiation. - Jun Kong 002; Olcay Sertel; Hiroyuki Shimada; Kim L. Boyer; Joel H. Saltz; Metin N. Gurcan (Computer-Aided Diagnosis, 2008)

Computerized microscopic image analysis of follicular lymphoma. - Olcay Sertel; Jun Kong 002; Gerard Lozanski; Ümit V. Çatalyürek; Joel H. Saltz; Metin N. Gurcan (Computer-Aided Diagnosis, 2008)

Computer-aided prognosis of neuroblastoma: classification of stromal development on whole-slide images. - Olcay Sertel; Jun Kong 002; Hiroyuki Shimada; Ümit V. Çatalyürek; Joel H. Saltz; Metin N. Gurcan (Computer-Aided Diagnosis, 2008)

Analysis and Semantic Querying in Large Biomedical Image Datasets. - Vijay S. Kumar; Sivaramakrishnan Narayanan; Tahsin M. Kurç; Jun Kong 002; Metin N. Gurcan; Joel H. Saltz (Computer, 2008)

Feature-based registration of histopathology images with different stains: An application for computerized follicular lymphoma prognosis. - Lee Cooper 001; Olcay Sertel; Jun Kong 002; Gerard Lozanski; Kun Huang 001; Metin N. Gurcan (Comput. Methods Programs Biomed., 2009)

Computer-aided evaluation of neuroblastoma on whole-slide histology images: Classifying grade of neuroblastic differentiation. - Jun Kong 002; Olcay Sertel; Hiroyuki Shimada; Kim L. Boyer; Joel H. Saltz; Metin N. Gurcan (Pattern Recognit., 2009)

Computer-aided prognosis of neuroblastoma on whole-slide images: Classification of stromal development. - Olcay Sertel; Jun Kong 002; Hiroyuki Shimada; Ümit V. Çatalyürek; Joel H. Saltz; Metin N. Gurcan (Pattern Recognit., 2009)

Histopathological Image Analysis Using Model-Based Intermediate Representations and Color Texture: Follicular Lymphoma Grading. - Olcay Sertel; Jun Kong 002; Ümit V. Çatalyürek; Gerard Lozanski; Joel H. Saltz; Metin N. Gurcan (J. Signal Process. Syst., 2009)

High-Performance Systems for in Silico Microscopy Imaging Studies. - Fusheng Wang 001; Tahsin M. Kurç; Patrick M. Widener; Tony Pan; Jun Kong 002; Lee Cooper 001; David A. Gutman; Ashish Sharma 001; Sharath R. Cholleti; Vijay Kumar (DILS, 2010)

Texture based image recognition in microscopy images of diffuse gliomas with multi-class gentle boosting mechanism. - Jun Kong 002; Lee Cooper 001; Ashish Sharma 001; Tahsin M. Kurç; Daniel J. Brat; Joel H. Saltz (ICASSP, 2010)

High Performance Computing Techniques for Scaling Image Analysis Workflows. - Patrick M. Widener; Tahsin M. Kurç; Wenjin Chen; Fusheng Wang 001; Lin Yang 002; Jun Hu; Vijay Kumar; Vicky Chu; Lee Cooper 001; Jun Kong 002; Ashish Sharma 001; Tony Pan; et al. (PARA (2), 2010)

An Integrative Approach for In Silico Glioma Research. - Lee A. D. Cooper; Jun Kong 002; David A. Gutman; Fusheng Wang 001; Sharath R. Cholleti; Tony C. Pan; Patrick M. Widener; Ashish Sharma 001; Tom Mikkelsen; Adam E. Flanders; Daniel L. Rubin; Erwin G. Van Meir; et al. (IEEE Trans. Biomed. Eng., 2010)

Computer-Based Image Analysis of Liver Steatosis with Large-Scale Microscopy Imagery and Correlation with Magnetic Resonance Imaging Lipid Analysis. - Jun Kong 002; Michael J. Lee; Pelin Bagci; Puneet Sharma; Diego R. Martín; N. Volkan Adsay; Joel H. Saltz; Alton B. Farris (BIBM, 2011)

Towards building computerized image analysis framework for nucleus discrimination in microscopy images of diffuse glioma. - Jun Kong 002; Lee Cooper 001; Tahsin M. Kurç; Daniel J. Brat; Joel H. Saltz (EMBC, 2011)

In silico analysis of nuclei in glioblastoma using large-scale microscopy images improves prediction of treatment response. - Jun Kong 002; Lee Cooper 001; Carlos Sanchez Moreno; Fusheng Wang 001; Tahsin M. Kurç; Joel H. Saltz; Daniel J. Brat (EMBC, 2011)

Morphological signatures and genomic correlates in glioblastoma. - Lee A. D. Cooper; Jun Kong 002; Fusheng Wang 001; Tahsin M. Kurç; Carlos Sanchez Moreno; Daniel J. Brat; Joel H. Saltz (ISBI, 2011)

A comprehensive framework for classification of nuclei in digital microscopy imaging: An application to diffuse gliomas. - Jun Kong 002; Lee Cooper 001; Fusheng Wang 001; Candace Chisolm; Carlos Sanchez Moreno; Tahsin M. Kurç; Patrick M. Widener; Daniel J. Brat; Joel H. Saltz (ISBI, 2011)

A new steerable pressure force for parametric deformable models. - Jun Kong 002; Lee Cooper 001; Ashish Sharma 001; Tahsin M. Kurç; Daniel J. Brat; Joel H. Saltz (Image Processing, 2011)

Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes. - Jun Kong 002; Lee A. D. Cooper; Fusheng Wang 001; David A. Gutman; Jingjing Gao; Candace Chisolm; Ashish Sharma 001; Tony Pan; Erwin G. Van Meir; Tahsin M. Kurç; Carlos Sanchez Moreno; Joel H. Saltz; et al. (IEEE Trans. Biomed. Eng., 2011)

High Performance Computing for Integrative Analysis of Large Pathology Image Datasets. - Tahsin M. Kurç; Joel H. Saltz; George Teodoro; Tony Pan; Lee A. D. Cooper; Jun Kong 002; David A. Gutman; Daniel J. Brat; Fusheng Wang 001 (AMIA, 2012)

Accelerating Large Scale Image Analyses on Parallel, CPU-GPU Equipped Systems. - George Teodoro; Tahsin M. Kurç; Tony Pan; Lee A. D. Cooper; Jun Kong 002; Patrick M. Widener; Joel H. Saltz (IPDPS, 2012)

High-throughput Execution of Hierarchical Analysis Pipelines on Hybrid Cluster Platforms - George Teodoro; Tony Pan; Tahsin M. Kurç; Jun Kong 002; Lee A. D. Cooper; Joel H. Saltz (CoRR, 2012)

Integrated morphologic analysis for the identification and characterization of disease subtypes. - Lee A. D. Cooper; Jun Kong 002; David A. Gutman; Fusheng Wang 001; Jingjing Gao; Christina Appin; Sharath R. Cholleti; Tony Pan; Ashish Sharma 001; Lisa Scarpace; Tom Mikkelsen; Tahsin M. Kurç; et al. (J. Am. Medical Informatics Assoc., 2012)

Digital Pathology: Data-Intensive Frontier in Medical Imaging. - Lee A. D. Cooper; Alexis B. Carter; Alton B. Farris; Fusheng Wang 001; Jun Kong 002; David A. Gutman; Patrick M. Widener; Tony C. Pan; Sharath R. Cholleti; Ashish Sharma 001; Tahsin M. Kurç; Daniel J. Brat; et al. (Proc. IEEE, 2012)

High-performance computational analysis of glioblastoma pathology images with database support identifies molecular and survival correlates. - Jun Kong 002; Fusheng Wang 001; George Teodoro; Lee Cooper 001; Carlos Sanchez Moreno; Tahsin M. Kurç; Tony Pan; Joel H. Saltz; Daniel J. Brat (BIBM, 2013)

High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms. - George Teodoro; Tony Pan; Tahsin M. Kurç; Jun Kong 002; Lee A. D. Cooper; Norbert Podhorszki; Scott Klasky; Joel H. Saltz (IPDPS, 2013)

Comparative Performance Analysis of Intel Xeon Phi, GPU, and CPU. - George Teodoro; Tahsin M. Kurç; Jun Kong 002; Lee Cooper 001; Joel H. Saltz (CoRR, 2013)

Feature-based analysis of large-scale spatio-temporal sensor data on hybrid architectures. - Joel H. Saltz; George Teodoro; Tony Pan; Lee A. D. Cooper; Jun Kong 002; Scott Klasky; Tahsin M. Kurç (Int. J. High Perform. Comput. Appl., 2013)

Efficient irregular wavefront propagation algorithms on hybrid CPU-GPU machines. - George Teodoro; Tony Pan; Tahsin M. Kurç; Jun Kong 002; Lee A. D. Cooper; Joel H. Saltz (Parallel Comput., 2013)

Comparative Performance Analysis of Intel (R) Xeon Phi (TM), GPU, and CPU: A Case Study from Microscopy Image Analysis. - George Teodoro; Tahsin M. Kurç; Jun Kong 002; Lee Cooper 001; Joel H. Saltz (IPDPS, 2014)

Region Templates: Data Representation and Management for Large-Scale Image Analysis. - George Teodoro; Tony Pan; Tahsin M. Kurç; Jun Kong 002; Lee Cooper 001; Scott Klasky; Joel H. Saltz (CoRR, 2014)

Region templates: Data representation and management for high-throughput image analysis. - George Teodoro; Tony Pan; Tahsin M. Kurç; Jun Kong 002; Lee Cooper 001; Scott Klasky; Joel H. Saltz (Parallel Comput., 2014)

An interactive learning framework for scalable classification of pathology images. - Michael Nalisnik; David A. Gutman; Jun Kong 002; Lee A. D. Cooper (IEEE BigData, 2015)

Automated cell segmentation with 3D fluorescence microscopy images. - Jun Kong 002; Fusheng Wang 001; George Teodoro; Yanhui Liang; Yangyang Zhu; Carol Tucker-Burden; Daniel J. Brat (ISBI, 2015)

Liver whole slide image analysis for 3D vessel reconstruction. - Yanhui Liang; Fusheng Wang 001; Darren Treanor; Derek R. Magee; George Teodoro; Yangyang Zhu; Jun Kong 002 (ISBI, 2015)

A 3D Primary Vessel Reconstruction Framework with Serial Microscopy Images. - Yanhui Liang; Fusheng Wang 001; Darren Treanor; Derek R. Magee; George Teodoro; Yangyang Zhu; Jun Kong 002 (MICCAI (3), 2015)

Efficient Irregular Wavefront Propagation Algorithms on Intel(R) Xeon Phi(TM). - Jeremias M. Gomes; George Teodoro; Alba de Melo; Jun Kong 002; Tahsin M. Kurç; Joel H. Saltz (SBAC-PAD, 2015)

Three-Dimensional Data Analytics for Pathology Imaging. - Yanhui Liang; Jun Kong 002; Yangyang Zhu; Fusheng Wang 001 (Big-O(Q)/DMAH@VLDB, 2015)

Performance Analysis and Efficient Execution on Systems with multi-core CPUs, GPUs and MICs. - George Teodoro; Tahsin M. Kurç; Guilherme Andrade; Jun Kong 002; Renato Ferreira 001; Joel H. Saltz (CoRR, 2015)

Three-Dimension (3D) Blood Vessel Reconstruction and Spatial Analytics with Whole-Slide Histological Images. - Yanhui Liang; Jun Kong 002; Fusheng Wang 001 (AMIA, 2016)

Scalable 3D spatial queries for analytical pathology imaging with MapReduce. - Yanhui Liang; Hoang Vo; Ablimit Aji; Jun Kong 002; Fusheng Wang 001 (SIGSPATIAL/GIS, 2016)

Robust cell segmentation for histological images of Glioblastoma. - Jun Kong 002; Pengyue Zhang; Yanhui Liang; George Teodoro; Daniel J. Brat; Fusheng Wang 001 (ISBI, 2016)

Cloud-Based Whole Slide Image Analysis Using MapReduce. - Hoang Vo; Jun Kong 002; Dejun Teng; Yanhui Liang; Ablimit Aji; George Teodoro; Fusheng Wang 001 (DMAH@VLDB, 2016)

IEVQ: An Iterative Example-Based Visual Query for Pathology Database. - Cong Xie; Wen Zhong; Jun Kong 002; Wei Xu 020; Klaus Mueller 001; Fusheng Wang 001 (DMAH@VLDB, 2016)

Efficient Methods and Parallel Execution for Algorithm Sensitivity Analysis with Parameter Tuning on Microscopy Imaging Datasets. - George Teodoro; Tahsin M. Kurç; Luis F. R. Taveira; Alba C. M. A. Melo; Jun Kong 002; Joel H. Saltz (CoRR, 2016)

A framework for 3D vessel analysis using whole slide images of liver tissue sections. - Yanhui Liang; Fusheng Wang 001; Darren Treanor; Derek R. Magee; Nick Roberts; George Teodoro; Yangyang Zhu; Jun Kong 002 (Int. J. Comput. Biol. Drug Des., 2016)

Parallel and Efficient Sensitivity Analysis of Microscopy Image Segmentation Workflows in Hybrid Systems. - Willian Barreiros; George Teodoro; Tahsin M. Kurç; Jun Kong 002; Alba C. M. A. Melo; Joel H. Saltz (CLUSTER, 2017)

iSPEED: an Efficient In-Memory Based Spatial Query System for Large-Scale 3D Data with Complex Structures. - Yanhui Liang; Hoang Vo; Jun Kong 002; Fusheng Wang 001 (SIGSPATIAL/GIS, 2017)

Dynamic registration for gigapixel serial whole slide images. - Blair J. Rossetti; Fusheng Wang 001; Pengyue Zhang; George Teodoro; Daniel J. Brat; Jun Kong 002 (ISBI, 2017)

Automated level set segmentation of histopathologic cells with sparse shape prior support and dynamic occlusion constraint. - Pengyue Zhang; Fusheng Wang 001; George Teodoro; Yanhui Liang; Daniel J. Brat; Jun Kong 002 (ISBI, 2017)

Application performance analysis and efficient execution on systems with multi-core CPUs, GPUs and MICs: a case study with microscopy image analysis. - George Teodoro; Tahsin M. Kurç; Guilherme Andrade; Jun Kong 002; Renato Ferreira 001; Joel H. Saltz (Int. J. High Perform. Comput. Appl., 2017)

Clumped Nuclei Segmentation with Adjacent Point Match and Local Shape-Based Intensity Analysis in Fluorescence Microscopy Images. - Xiaoyuan Guo; Hanyi Yu; Blair J. Rossetti; George Teodoro; Daniel J. Brat; Jun Kong 002 (EMBC, 2018)

Analysis of Cellular Feature Differences of Astrocytomas with Distinct Mutational Profiles Using Digitized Histopathology Images. - Mousumi Roy; Fusheng Wang 001; George Teodoro; Jose Velazqeuz Vega; Daniel J. Brat; Jun Kong 002 (EMBC, 2018)

Segmentation of Overlapped Steatosis in Whole-Slide Liver Histopathology Microscopy Images. - Mousumi Roy; Fusheng Wang 001; George Teodoro; Miriam B. Vos; Alton Brad Farris; Jun Kong 002 (EMBC, 2018)

Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel® Xeon Phi™. - Jeremias M. Gomes; Alba Cristina Magalhaes Alves de Melo; Jun Kong 002; Tahsin M. Kurç; Joel H. Saltz; George Teodoro (Concurr. Comput. Pract. Exp., 2018)

Clumped Nuclei Segmentation with Adjacent Point Match and Local Shape based Intensity Analysis for Overlapped Nuclei in Fluorescence In-Situ Hybridization Images. - Xiaoyuan Guo; Hanyi Yu; Blair J. Rossetti; George Teodoro; Daniel J. Brat; Jun Kong 002 (CoRR, 2018)

Tuning for Tissue Image Segmentation Workflows for Accuracy and Performance. - Luis F. R. Taveira; Tahsin M. Kurç; Alba C. M. A. Melo; Jun Kong 002; Erich Bremer; Joel H. Saltz; George Teodoro (CoRR, 2018)

iSPEED: a Scalable and Distributed In-Memory Based Spatial Query System for Large and Structurally Complex 3D Data. - Hoang Vo; Yanhui Liang; Jun Kong 002; Fusheng Wang 001 (Proc. VLDB Endow., 2018)

Machine Learning Based Opioid Overdose Prediction Using Electronic Health Records. - Xinyu Dong; Sina Rashidian; Yu Wang 137; Janos G. Hajagos; Xia Zhao; Richard N. Rosenthal; Jun Kong 002; Mary M. Saltz; Joel H. Saltz; Fusheng Wang 001 (AMIA, 2019)

Liver Steatosis Segmentation With Deep Learning Methods. - Xiaoyuan Guo; Fusheng Wang 001; George Teodoro; Alton B. Farris; Jun Kong 002 (ISBI, 2019)

Sensitivity analysis in digital pathology: Handling large number of parameters with compute expensive workflows. - Jeremias M. Gomes; Willian Barreiros Jr.; Tahsin M. Kurç; Alba C. M. A. Melo; Jun Kong 002; Joel H. Saltz; George Teodoro (Comput. Biol. Medicine, 2019)

Run-time Parameter Sensitivity Analysis Optimizations. - Eduardo Scartezini; Willian Barreiros Jr.; Tahsin M. Kurç; Jun Kong 002; Alba C. M. A. Melo; Joel H. Saltz; George Teodoro (CoRR, 2019)

Scalable and flexible management of medical image big data. - Dejun Teng; Jun Kong 002; Fusheng Wang 001 (Distributed Parallel Databases, 2019)

MaReIA: a cloud MapReduce based high performance whole slide image analysis framework. - Hoang Vo; Jun Kong 002; Dejun Teng; Yanhui Liang; Ablimit Aji; George Teodoro; Fusheng Wang 001 (Distributed Parallel Databases, 2019)

Multi-objective Parameter Auto-tuning for Tissue Image Segmentation Workflows. - Luis F. R. Taveira; Tahsin M. Kurç; Alba C. M. A. Melo; Jun Kong 002; Erich Bremer; Joel H. Saltz; George Teodoro (J. Digit. Imaging, 2019)

Automatic Brain Organ Segmentation with 3D Fully Convolutional Neural Network for Radiation Therapy Treatment Planning. - Hongyi Duanmu; Jinkoo Kim; Praitayini Kanakaraj; Andrew Wang; John Joshua; Jun Kong 002; Fusheng Wang 001 (ISBI, 2020)

Prediction of Pathological Complete Response to Neoadjuvant Chemotherapy in Breast Cancer Using Deep Learning with Integrative Imaging, Molecular and Demographic Data. - Hongyi Duanmu; Pauline Boning Huang; Srinidhi Brahmavar; Stephanie Lin; Thomas Ren; Jun Kong 002; Fusheng Wang 001; Tim Q. Duong (MICCAI (2), 2020)

Optimizing parameter sensitivity analysis of large-scale microscopy image analysis workflows with multilevel computation reuse. - Willian Barreiros Jr.; Jeremias Moreira; Tahsin M. Kurç; Jun Kong 002; Alba C. M. A. Melo; Joel H. Saltz; George Teodoro (Concurr. Comput. Pract. Exp., 2020)

Accelerating Spatial Cross-Matching on CPU-GPU Hybrid Platform With CUDA and OpenACC. - Furqan Baig; Chao Gao; Dejun Teng; Jun Kong 002; Fusheng Wang 001 (Frontiers Big Data, 2020)

Tensile force-induced cytoskeletal remodeling: Mechanics before chemistry. - Xiaona Li; Qin Ni; Xiuxiu He; Jun Kong 002; Soon-Mi Lim; Garegin A. Papoian; Jerome P. Trzeciakowski; Andreea Trache; Yi Jiang (PLoS Comput. Biol., 2020)

GPU-based Real-time Contact Tracing at Scale. - Dejun Teng; Akshay Nehe; Prajeeth Emanuel; Furqan Baig; Jun Kong 002; Fusheng Wang 001 (SIGSPATIAL/GIS, 2021)

SPEAR: Dynamic Spatio-Temporal Query Processing over High Velocity Data Streams. - Furqan Baig; Dejun Teng; Jun Kong 002; Fusheng Wang 001 (ICDE, 2021)

Image Registration with Optimal Regularization Parameter Selection by Learned Auto Encoder Features. - Aurelie Akossi; Fusheng Wang 001; George Teodoro; Jun Kong 002 (ISBI, 2021)

Histopathology Image Registration By Integrated Texture And Spatial Proximity Based Landmark Selection And Modification. - Pangpang Liu; Fusheng Wang 001; George Teodoro; Jun Kong 002 (ISBI, 2021)

IDEAL: a Vector-Raster Hybrid Model for Efficient Spatial Queries over Complex Polygons. - Dejun Teng; Furqan Baig; Qiheng Sun; Jun Kong 002; Fusheng Wang 001 (MDM, 2021)

Spatial Attention-Based Deep Learning System for Breast Cancer Pathological Complete Response Prediction with Serial Histopathology Images in Multiple Stains. - Hongyi Duanmu; Shristi Bhattarai; Hongxiao Li; Chia Cheng Cheng; Fusheng Wang 001; George Teodoro; Emiel A. M. Janssen; Keerthi Gogineni; Preeti Subhedar; Ritu Aneja; Jun Kong 002 (MICCAI (8), 2021)

Foveal blur-boosted segmentation of nuclei in histopathology images with shape prior knowledge and probability map constraints. - Hongyi Duanmu; Fusheng Wang 001; George Teodoro; Jun Kong 002 (Bioinform., 2021)

Building robust pathology image analyses with uncertainty quantification. - Jeremias M. Gomes; Jun Kong 002; Tahsin M. Kurç; Alba C. M. A. Melo; Renato Ferreira 001; Joel H. Saltz; George Teodoro (Comput. Methods Programs Biomed., 2021)

3DPro: Querying Complex Three-Dimensional Data with Progressive Compression and Refinement. - Dejun Teng; Furqan Baig; Hoang Vo; Yanhui Liang; Jun Kong 002; Fusheng Wang 001 (EDBT, 2022)

SPEAR-board: cross-platform interactive spatio-temporal big data analytics. - Furqan Baig; Pradeep Nalluri; Jun Kong 002; Fusheng Wang 001 (SIGSPATIAL/GIS, 2022)

Real-time spatial registration for 3D human atlas. - Lu Chen; Dejun Teng; Tian Zhu; Jun Kong 002; Bruce W. Herr; Andreas Bueckle; Katy Börner; Fusheng Wang 001 (BigSpatial@SIGSPATIAL, 2022)

A spatial attention guided deep learning system for prediction of pathological complete response using breast cancer histopathology images. - Hongyi Duanmu; Shristi Bhattarai; Hongxiao Li; Zhan Shi; Fusheng Wang 001; George Teodoro; Keerthi Gogineni; Preeti Subhedar; Umay Kiraz; Emiel A. M. Janssen; Ritu Aneja; Jun Kong 002 (Bioinform., 2022)

Virtual liver needle biopsy from reconstructed three-dimensional histopathological images: Quantification of sampling error. - Qiang Li; Fusheng Wang 001; Yaobing Chen; Hao Chen; Shengdi Wu; Alton B. Farris; Yi Jiang; Jun Kong 002 (Comput. Biol. Medicine, 2022)

MultiHeadGAN: A deep learning method for low contrast retinal pigment epithelium cell segmentation with fluorescent flatmount microscopy images. - Hanyi Yu; Fusheng Wang 001; George Teodoro; John Nickerson; Jun Kong 002 (Comput. Biol. Medicine, 2022)

Artificial intelligence based liver portal tract region identification and quantification with transplant biopsy whole-slide images. - Hanyi Yu; Nima Sharifai; Kun Jiang; Fusheng Wang 001; George Teodoro; Alton B. Farris; Jun Kong 002 (Comput. Biol. Medicine, 2022)

Efficient microscopy image analysis on CPU-GPU systems with cost-aware irregular data partitioning. - Willian Barreiros Jr.; Alba C. M. A. Melo; Jun Kong 002; Renato Ferreira 001; Tahsin M. Kurç; Joel H. Saltz; George Teodoro (J. Parallel Distributed Comput., 2022)

Efficient 3D Spatial Queries for Complex Objects. - Dejun Teng; Yanhui Liang; Hoang Vo; Jun Kong 002; Fusheng Wang 001 (ACM Trans. Spatial Algorithms Syst., 2022)

Effective and efficient active learning for deep learning-based tissue image analysis. - André L. S. Meirelles; Tahsin M. Kurç; Jun Kong 002; Renato Ferreira 001; Joel H. Saltz; George Teodoro (Bioinform., 2023)

Self-supervised semantic segmentation of retinal pigment epithelium cells in flatmount fluorescent microscopy images. - Hanyi Yu; Fusheng Wang 001; George Teodoro; Fan Chen; Xiaoyuan Guo; John Nickerson; Jun Kong 002 (Bioinform., 2023)

Integrative Graph-Transformer Framework for Histopathology Whole Slide Image Representation and Classification. - Zhan Shi; Jingwei Zhang; Jun Kong 002; Fusheng Wang 001 (MICCAI (11), 2024)

NACNet: A histology context-aware transformer graph convolution network for predicting treatment response to neoadjuvant chemotherapy in Triple Negative Breast Cancer. - Qiang Li; George Teodoro; Yi Jiang; Jun Kong 002 (Comput. Medical Imaging Graph., 2024)

Efficient spatial queries over complex polygons with hybrid representations. - Dejun Teng; Furqan Baig; Zhaohui Peng; Jun Kong 002; Fusheng Wang 001 (GeoInformatica, 2024)

IMI-GPU: Inverted multi-index for billion-scale approximate nearest neighbor search with GPUs. - Alan Araujo; Willian Barreiros; Jun Kong 002; Renato Ferreira 001; George Teodoro (J. Parallel Distributed Comput., 2025)

A hierarchical data partitioning strategy for irregular applications: a case study in digital pathology. - Willian Barreiros; Jun Kong 002; Renato Ferreira 001; George Teodoro (Clust. Comput., 2025)