Molecular Modeling of Full-Length OxyR from Shewanella oneidensis MR-1 and Molecular Dynamics Studies of the Activation Domain. - Jun-tao Guo; Ying Xu 001 (CSB, 2004)

Structural Analysis of FGFR1 Kinase Activation through Molecular Dynamics Simulation. - Peng Wang; Zhengchang Su; Jun-tao Guo; Ying Xu 001 (CSB, 2004)

Protein Fold Recognition Through Application of Residual Dipolar Coupling Data. - Youxing Qu; Jun-tao Guo; Victor Olman; Ying Xu 001 (Pacific Symposium on Biocomputing, 2004)

PROSPECT-PSPP: an automatic computational pipeline for protein structure prediction. - Jun-tao Guo; Kyle Ellrott; Won Jae Chung; Dong Xu 002; Sergei Passovets; Ying Xu 001 (Nucleic Acids Res., 2004)

Structural genomics analysis of alternative splicing and its application in modeling structures of alternatively spliced variants. - Peng Wang; Bo Yan; Jun-tao Guo; Chindo Hicks; Ying Xu 001 (CSB Workshops, 2005)

An Algorithm for Simultaneous Backbone Threading and Side-Chain Packing. - Guojun Li; Zhijie Liu; Jun-tao Guo; Ying Xu 001 (Algorithmica, 2007)

Improving the Performance of protein Threading Using Insertion/Deletion Frequency Arrays. - Kyle Ellrott; Jun-tao Guo; Victor Olman; Ying Xu 001 (J. Bioinform. Comput. Biol., 2008)

Structural analysis of heme proteins: Implication for design and prediction. - Ting Li; Herbert L. Bonkovsky; Jun-tao Guo (BIBM Workshops, 2010)

Improving Prediction Accuracy of Protein-DNA Docking with GPU Computing. - Bo Hong; Jiadong Wu; Jun-tao Guo (BIBM, 2011)

TFinDit: transcription factor-DNA interaction data depository. - Daniel Turner; RyangGuk Kim; Jun-tao Guo (BMC Bioinform., 2012)

A knowledge-based orientation potential for transcription factor-DNA docking. - Takako Takeda; Rosario I. Corona; Jun-tao Guo (Bioinform., 2013)

Structure-based prediction of transcription factor binding specificity using an integrative energy function. - Alvin Farrel; Jonathan Murphy; Jun-tao Guo (Bioinform., 2016)

Confidence assessment of protein-DNA complex models. - Rosario I. Corona; Sanjana Sudarshan; Jun-tao Guo; Srinivas Aluru (BIBM, 2017)

An efficient algorithm for improving structure-based prediction of transcription factor binding sites. - Alvin Farrel; Jun-tao Guo (BMC Bioinform., 2017)

An SVM-based method for assessment of transcription factor-DNA complex models. - Rosario I. Corona; Sanjana Sudarshan; Srinivas Aluru; Jun-tao Guo (BMC Bioinform., 2018)

Prediction of single-stranded DNA binding proteins with protein language model. - Siwen Wu; Jinbo Xu; Jun-tao Guo (BIBM, 2024)

Improved prediction of DNA and RNA binding proteins with deep learning models. - Siwen Wu; Jun-tao Guo (Briefings Bioinform., 2024)