UTGB toolkit for personalized genome browsers. - Taro L. Saito; Jun Yoshimura; Shin Sasaki; Budrul Ahsan; Atsushi Sasaki; Reginaldo Kuroshu; Shinichi Morishita (Bioinform., 2009)

siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect. - Yuki Naito; Jun Yoshimura; Shinichi Morishita; Kumiko Ui-Tei (BMC Bioinform., 2009)

Rapid detection of expanded short tandem repeats in personal genomics using hybrid sequencing. - Koichiro Doi; Taku Monjo; Pham H. Hoang; Jun Yoshimura; Hideaki Yurino; Jun Mitsui; Hiroyuki Ishiura; Yuji Takahashi; Yaeko Ichikawa; Jun Goto; Shoji Tsuji; Shinichi Morishita (Bioinform., 2014)

AgIn: measuring the landscape of CpG methylation of individual repetitive elements. - Yuta Suzuki; Jonas Korlach; Stephen W. Turner; Tatsuya Tsukahara; Junko Taniguchi; Wei Qu; Kazuki Ichikawa; Jun Yoshimura; Hideaki Yurino; Yuji Takahashi; Jun Mitsui; Hiroyuki Ishiura; et al. (Bioinform., 2016)