A landmark extraction method for protein 2DE gel images based on multi-dimensional clustering. - Jung Eun Shim; Won Suk Lee (Artif. Intell. Medicine, 2005)

A spot-matching framework for improving matching accuracy in protein 2-DE gel image analysis. - Jung Eun Shim; Yanhua Jin; Won Suk Lee (IDEAS, 2008)

On-line analytical framework for the 2-DE based proteome information. - Jung Eun Shim; Won Suk Lee (Expert Syst. Appl., 2009)

Exception discovery: a novel method for the identification of differentially expressed proteins. - Jung Eun Shim; Dan Bi Kim; Won Suk Lee; Sang Yun Cho; Eunsil Yu (IEEE Trans. Inf. Technol. Biomed., 2010)

A probability-based error spot filtering method in protein 2-DE image spot pattern matching analysis. - Yanhua Jin; Jung Eun Shim; Won Suk Lee (Expert Syst. Appl., 2011)

YeastNet v3: a public database of data-specific and integrated functional gene networks for Saccharomyces cerevisiae. - Hanhae Kim; Junha Shin; Eiru Kim; Hyojin Kim 002; Sohyun Hwang; Jung Eun Shim; Insuk Lee (Nucleic Acids Res., 2014)

EcoliNet: a database of cofunctional gene network for Escherichia coli. - Hanhae Kim; Jung Eun Shim; Junha Shin; Insuk Lee (Database J. Biol. Databases Curation, 2015)

RiceNet v2: an improved network prioritization server for rice genes. - Tak Lee; Taeyun Oh; Sunmo Yang; Junha Shin; Sohyun Hwang; Chan Yeong Kim; Hyojin Kim 002; Hongseok Shim; Jung Eun Shim; Pamela C. Ronald; Insuk Lee (Nucleic Acids Res., 2015)

AraNet v2: an improved database of co-functional gene networks for the study of Arabidopsis thaliana and 27 other nonmodel plant species. - Tak Lee; Sunmo Yang; Eiru Kim; Younhee Ko; Sohyun Hwang; Junha Shin; Jung Eun Shim; Hongseok Shim; Hyojin Kim 002; Chanyoung Kim; Insuk Lee (Nucleic Acids Res., 2015)

FlyNet: a versatile network prioritization server for the Drosophila community. - Junha Shin; Sunmo Yang; Eiru Kim; Chan Yeong Kim; Hongseok Shim; Ara Cho; Hyojin Kim 002; Sohyun Hwang; Jung Eun Shim; Insuk Lee (Nucleic Acids Res., 2015)

Weighted mutual information analysis substantially improves domain-based functional network models. - Jung Eun Shim; Insuk Lee (Bioinform., 2016)

GWAB: a web server for the network-based boosting of human genome-wide association data. - Jung Eun Shim; Changbae Bang; Sunmo Yang; Tak Lee; Sohyun Hwang; Chan Yeong Kim; Ulf Martin Singh-Blom; Edward M. Marcotte; Insuk Lee (Nucleic Acids Res., 2017)

Pathway-specific protein domains are predictive for human diseases. - Jung Eun Shim; Ji Hyun Kim; Junha Shin; Ji Eun Lee; Insuk Lee (PLoS Comput. Biol., 2019)

Construction of Functional Protein Networks Using Domain Profile Associations. - Jung Eun Shim; Insuk Lee (Protein-Protein Interaction Networks, 2020)