A quality control algorithm for filtering SNPs in genome-wide association studies. - Monnat Pongpanich; Patrick F. Sullivan; Jung-Ying Tzeng (Bioinform., 2010)

Integrative gene set analysis of multi-platform data with sample heterogeneity. - Jun Hu; Jung-Ying Tzeng (Bioinform., 2014)

Rare Variants Association Analysis in Large-Scale Sequencing Studies at the Single Locus Level. - X. Jessie Jeng; Z. John Daye; Wenbin Lu; Jung-Ying Tzeng (PLoS Comput. Biol., 2016)

Identifying individual risk rare variants using protein structure guided local tests (POINT). - Rachel Marceau West; Wenbin Lu; Daniel M. Rotroff; Mélaine A. Kuenemann; Sheng-Mao Chang; Michael C. Wu; Michael J. Wagner; John B. Buse; Alison A. Motsinger-Reif; Denis Fourches; Jung-Ying Tzeng (PLoS Comput. Biol., 2019)

Association test using Copy Number Profile Curves (CONCUR) enhances power in rare copy number variant analysis. - Amanda Brucker; Wenbin Lu; Rachel Marceau West; Qi-You Yu; Chuhsing Kate Hsiao; Tzu-Hung Hsiao; Ching-Heng Lin; Patrik K. E. Magnusson; Patrick F. Sullivan; Jin P. Szatkiewicz; Tzu-Pin Lu; Jung-Ying Tzeng (PLoS Comput. Biol., 2020)

Gene-set integrative analysis of multi-omics data using tensor-based association test. - Sheng-Mao Chang; Meng Yang; Wenbin Lu; Yu-Jyun Huang; Yueyang Huang; Hung Hung; Jeffrey C. Miecznikowski; Tzu-Pin Lu; Jung-Ying Tzeng (Bioinform., 2021)

TensorTest2D: Fitting Generalized Linear Models with Matrix Covariates. - Ping-Yang Chen; Hsing-Ming Chang; Yu-Ting Chen; Jung-Ying Tzeng; Sheng-Mao Chang (R J., 2022)